Nocardioides bizhenqiangii: SHK19_06685
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Entry
SHK19_06685 CDS
T10239
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nbi Nocardioides bizhenqiangii
Pathway
nbi03030
DNA replication
nbi03410
Base excision repair
nbi03420
Nucleotide excision repair
nbi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SHK19_06685 (ligA)
03410 Base excision repair
SHK19_06685 (ligA)
03420 Nucleotide excision repair
SHK19_06685 (ligA)
03430 Mismatch repair
SHK19_06685 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nbi03032
]
SHK19_06685 (ligA)
03400 DNA repair and recombination proteins [BR:
nbi03400
]
SHK19_06685 (ligA)
Enzymes [BR:
nbi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SHK19_06685 (ligA)
DNA replication proteins [BR:
nbi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SHK19_06685 (ligA)
DNA repair and recombination proteins [BR:
nbi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SHK19_06685 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SHK19_06685 (ligA)
MMR (mismatch excision repair)
DNA ligase
SHK19_06685 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SHK19_06685 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Prot_ATP_ID_OB_C
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
WQQ27915
UniProt:
A0ABZ0ZV15
LinkDB
All DBs
Position
1363742..1365835
Genome browser
AA seq
697 aa
AA seq
DB search
MSDSVPAVRTPSAEIRDEHQQLAQGIEDARWRYFVLDQPTLSDAEYDLKWRRINELEEEY
PELQTPDSPTQKVGGTFSTEFTAVDHLQRMESLDNAFSFDELESWYKRLARDGAGDAALL
CELKVDGLAINLLYEKGRLVRALTRGDGRTGEDVTPNVRTIADIPDRLEESDDYPVPDLL
EARGEVFLSITAFDKLNESLVEAGKPMFANPRNSAAGSLRQKDPRVTASRDLGMVCHGIG
ARKGFEPSAQSEAYAALRAWGLPTSDRVRVLATLDEVKQFITHFGEHRHDVTEHEIDGVV
IKVDDVALQRRLGSTSRAPRWAIAFKYPPEEVNTKLLEIRVNVGRTGRVTPYGVMEPTKV
AGSTVERATLHNAYEVKRKDVRPGDTVILRKAGDVIPEILGPVLALRPDDLPEWVMPTEC
PSCGTSLAEQKEGDKDLRCPNSRLCRAQVYERVYHVASRGAFDIEGLGSEAAYALVEAGV
VANEGDVFSLDRDKLLRTPLFTRAPKKGEEGPQLSANGEGLLNNLQARKKVPLWRVLVAL
SIRHVGPTAARALATEFESMDAIRSASEQKLAAAEGVGPTIAEAVIEWFGVDWHVEIVDK
WAAAGVAMADERDASIARTLEGLTVVVTGSLQDFSRDSAKEAIIARGGKAAGSVSKNTDY
VVIGDNAGSKADKAEQLGVPMLDEDGFKALLERGPQG
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgagcgactcggtgcccgccgtacgaaccccgtccgctgagatccgcgacgagcaccag
cagctggcgcaggggatcgaggacgcgcgctggcggtacttcgtgctggaccagccgacg
ctgtccgacgcggagtacgacctcaagtggcgccggatcaacgagctggaggaggagtac
ccggagctgcagaccccggacagcccgacccagaaggtcggcggcaccttctcgaccgag
ttcaccgcggtcgaccacctgcagcggatggagagcctcgacaacgcgttctccttcgac
gagctcgagtcctggtacaagcggctggcccgtgacggcgccggcgatgcggcactgctg
tgcgagctcaaggtcgacgggctcgcgatcaacctgctctacgagaagggccgcctggtg
cgcgcgctcacccgcggcgacgggcgcaccggcgaggacgtcacgcccaacgtccggacc
atcgccgacatccccgaccggctcgaggagagcgacgactaccccgtgcccgacctgctc
gaggcgcgcggcgaggtcttcctgtcgatcaccgccttcgacaagctcaacgagtcgttg
gtcgaggccggcaagccgatgttcgccaacccgcgcaactcggcggccggatcgctgcgg
cagaaggacccgcgggtcaccgcgagccgtgacctcggcatggtgtgccacgggatcggc
gcccgcaaggggttcgagccgagcgcacagtccgaggcctacgcggcactgcgtgcgtgg
ggcctgccgaccagcgatcgggtgcgcgtgctggcgacgctcgacgaggtcaagcagttc
atcacccacttcggcgagcaccgccacgacgtcaccgagcacgagatcgacggcgtggtg
atcaaggtcgacgacgtcgcgctccagcggcggctcgggtccaccagtcgggctccgcga
tgggcgatcgcgttcaagtacccgcccgaggaggtcaacaccaagctgctcgagatccgg
gtcaacgtcgggcgcaccgggcgggtcacgccgtacggcgtcatggagcccaccaaggtc
gccggctccaccgtcgagcgggcgaccctgcacaacgcctacgaggtgaagcgcaaggac
gtccgccccggcgacacggtgatcctgcgcaaggccggcgacgtgatccccgagatcctc
gggccggtgctggcgctgcggcccgacgacctgccggagtgggtgatgccgaccgagtgc
ccctcgtgcggcacttcactggccgagcagaaggagggcgacaaggacctccgctgcccg
aactcgcgcctgtgccgggcccaggtctacgagcgggtctaccacgtggccagccggggc
gccttcgacatcgagggcctcgggtccgaggcggcctacgccctcgtcgaggccggcgtg
gtcgccaacgagggtgacgtgttctcgctggaccgcgacaagctgttgcggacgccgctc
ttcacccgggcgccgaagaagggcgaggaggggccgcagctcagcgccaacggcgagggc
ctcctcaacaacctgcaggcgcgcaagaaggtgccgctgtggcgggtgctggtcgcgctc
tcgatccgccacgtcgggccgaccgccgcccgggcgctggccaccgagttcgagtcgatg
gacgccatccgctcggcgagcgagcagaaactcgcggcggcagagggggtgggtccgacc
atcgccgaggcggtcatcgagtggttcggcgtcgactggcacgtcgagatcgtcgacaag
tgggccgccgccggcgtcgccatggccgacgagcgcgacgcgtcgatcgcccgcaccctc
gagggactgaccgtggtcgtcaccgggtcgctccaggatttcagtcgggactcggcgaag
gaggcgatcatcgcccggggcggcaaggcggccggttcggtgtcgaagaacaccgactac
gtcgtcatcggtgacaatgccggctccaaggcagacaaggccgagcagctcggcgtaccc
atgctcgacgaggacggcttcaaggcgctgctggagcgcgggccgcaaggctga
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