Candidatus Nanogingivalaceae bacterium JCVI_28_bin.11: HXK95_002570
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Entry
HXK95_002570 CDS
T09858
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nbj
Candidatus Nanogingivalaceae bacterium JCVI_28_bin.11
Pathway
nbj03030
DNA replication
nbj03410
Base excision repair
nbj03420
Nucleotide excision repair
nbj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nbj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HXK95_002570 (ligA)
03410 Base excision repair
HXK95_002570 (ligA)
03420 Nucleotide excision repair
HXK95_002570 (ligA)
03430 Mismatch repair
HXK95_002570 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nbj03032
]
HXK95_002570 (ligA)
03400 DNA repair and recombination proteins [BR:
nbj03400
]
HXK95_002570 (ligA)
Enzymes [BR:
nbj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HXK95_002570 (ligA)
DNA replication proteins [BR:
nbj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HXK95_002570 (ligA)
DNA repair and recombination proteins [BR:
nbj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HXK95_002570 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HXK95_002570 (ligA)
MMR (mismatch excision repair)
DNA ligase
HXK95_002570 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HXK95_002570 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
HHH
PTCB-BRCT
BRCT_2
DUF763
HHH_3
Motif
Other DBs
NCBI-ProteinID:
QWB91443
LinkDB
All DBs
Position
complement(515133..517148)
Genome browser
AA seq
671 aa
AA seq
DB search
MATIDKKNRYQDLVKLLNQYSFEYHTLDNASVPDSVYDSLFSELKKIEAEHPELISRNSP
TQRVGNVVKGGFLKVEHASRMLSLNDVFSEGEIVEWFERIKKIDPTLEDVFFADIKMDGL
ACSLIFENGEFVRAVTRGDSFVGEDVSSNVRTIKNIPFFLRAEKEFAFFENGKTEVRGEI
VILKDDFDKINKIRKEQGDPEFANPRNLAAGTIRQLDPLITASRPLYFRAYDIIRENPEE
VKTNEFAYSALKNLGFSVNEQAKKIIGIKQVVDFIEFWSEKRKELPFNTDGLVVKINNRD
KFSKLGVVGKQPRAAIAFKYSPEEATAVVSDIVISIGRTGIATPVAVFAPIQLAGTTVRH
ASLHNADEISRLDIRIGDTVVVFKAGDIIPKILRVLPELRPKNAEIFNFEKELSKQFPEI
EFYRPEGEVAYRAKGLNSELILKKTITFYASKAGLDIENLGEKNVNLLVEKGLIRDLADI
YNLQKNDLLKLERFAELSVNNLLQAIESSKNPELAKFIAALGIRHVGGETAKILAEKFVS
FENLQNAEIEDLLSIDGIGEKVAESILAYFSDDENLQILNKMFDFGVKVQNFAKNEGILS
GKNFVITGTLKEMSREKAAEKIELLGGKFQKSISKTTDFLVIGEKVGATKIEKAKKLGVK
ILEEDDFLEML
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaatagataaaaaaaatagatatcaagatttagttaaattattaaatcaatat
tcttttgaataccacacgctcgataacgcaagtgttccggattctgtctacgattcatta
ttttcagaattaaaaaagatagaagctgaacatcctgaacttatatcaagaaattcacca
actcaaagagttggaaatgttgtaaagggtggatttttaaaagttgagcatgcaagtaga
atgcttagcttaaatgatgtttttagtgaaggtgaaatcgttgaatggttcgagagaatt
aaaaaaatagatccaacactagaagatgttttttttgcagatataaaaatggacgggcta
gcttgttctttaatttttgaaaatggggagtttgtgcgagctgtgactcgaggtgattct
tttgttggtgaagatgtgtcgagcaatgtgcggactattaaaaatatcccattctttttg
cgagcagaaaaagagtttgcttttttcgagaatggcaaaactgaggttcgtggtgaaatt
gtaatcttaaaagatgactttgataagataaataaaatccgaaaggagcagggtgatcct
gaatttgcaaatcctcgcaatttggccgcaggaacgattcgtcagttagaccccttaatc
acagcttctcgaccactatattttcgagcttatgatattattcgcgaaaaccctgaagaa
gtcaaaactaatgaatttgcctattcagcattaaaaaaccttggcttttcagttaatgag
caggctaaaaaaatcataggaattaaacaagttgttgattttattgaattttggagtgaa
aaaagaaaagaacttccgtttaatacggatgggttagttgtaaaaattaataatcgtgat
aagttttcgaaacttggagtagttggtaagcagccgcgcgcagcaattgcatttaagtat
tccccggaagaagctactgcggtagtttcagatattgtgatttcgatcggtcggacggga
atagcaactccggttgcggtttttgcgccaatccagcttgctgggactactgttcgccat
gcgagtcttcataatgcggatgaaatttcgcgactagatattagaattggagatacggta
gttgtctttaaagcgggggatattattccgaagattttgcgagttttaccggagcttcgt
ccaaaaaatgctgaaatttttaatttcgaaaaagagctttcaaaacaatttcctgaaatt
gaattttatcgtccagaaggtgaggttgcgtatcgtgcgaaaggcttaaattccgagtta
atccttaaaaaaacgattactttttatgcttcaaaagcgggtctcgatattgagaattta
ggtgagaaaaatgtaaatctactagttgaaaaaggtttaattcgagatctggcggacatt
tacaatcttcaaaagaatgatttgttgaaacttgaacgttttgcagaactctctgtgaat
aatctacttcaagcaattgagtcttcgaaaaatcctgaacttgcgaaatttattgcggcg
ttaggtattcgccatgttggaggtgaaactgcaaaaattttagcggaaaagtttgtcagt
tttgaaaatcttcaaaatgctgagatagaagatttattatctatcgatggaattggtgaa
aaagtggctgaaagtattttggcgtattttagtgatgatgaaaatttacagattttgaat
aaaatgttcgattttggtgtgaaagtgcaaaattttgcaaaaaatgaggggattttaagt
ggtaagaattttgtaatcacggggacattaaaagaaatgtcacgcgaaaaagcagccgaa
aaaattgagttgcttggtggaaaattccaaaaatctatttcgaaaacaacggatttttta
gttattggtgaaaaagttggtgctacaaaaattgaaaaagcaaaaaaacttggtgtaaaa
attctagaagaggatgattttttagagatgctgtaa
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