Candidatus Niyogibacteria bacterium NC_groundwater_707_Ag_S-0.2um_45_26: HYY55_04300
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Entry
HYY55_04300 CDS
T09897
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nbn
Candidatus Niyogibacteria bacterium NC_groundwater_707_Ag_S-0.2um_45_26
Pathway
nbn03030
DNA replication
nbn03410
Base excision repair
nbn03420
Nucleotide excision repair
nbn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nbn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HYY55_04300 (ligA)
03410 Base excision repair
HYY55_04300 (ligA)
03420 Nucleotide excision repair
HYY55_04300 (ligA)
03430 Mismatch repair
HYY55_04300 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nbn03032
]
HYY55_04300 (ligA)
03400 DNA repair and recombination proteins [BR:
nbn03400
]
HYY55_04300 (ligA)
Enzymes [BR:
nbn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HYY55_04300 (ligA)
DNA replication proteins [BR:
nbn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HYY55_04300 (ligA)
DNA repair and recombination proteins [BR:
nbn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HYY55_04300 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HYY55_04300 (ligA)
MMR (mismatch excision repair)
DNA ligase
HYY55_04300 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HYY55_04300 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
Prok-RING_1
DUF4796_N
RUBY_RBDX
SLX1_C
Motif
Other DBs
NCBI-ProteinID:
QQG46151
UniProt:
A0A7T5RL72
LinkDB
All DBs
Position
764928..766955
Genome browser
AA seq
675 aa
AA seq
DB search
MDKIEAQKQIEKLRKVINHHRYLYHVLDRQEISDEALDSLKHELKKLEDRFPDLITPDSP
TQRVGGKALKEFKKVRHNVPMLSLEDAFLPEEITDWISRNSKVVRDAGSAALFAELKFDG
LAMSLIYIDGVLDRALTRGDGRIGEDVTQNARTVEAIPLRLEIRGKVSEAVRKEAEKIIK
KGVIEARGEIIITKKNFAKVNAEQKKAGKQIFANPRNLAAGSIRQLDSAITKSRRLDFHA
YDLIADFGQVLHSEEHEILSALGFKTDEKAKIFHDLKSLFSYREKIESERSRFEYETDGI
VVSVDDNDLFGRLGVVGKTPRGAIAFKFTPHESTTVIEDIIVQVGRTGAITPVAVLRPVQ
IGGVTVSRATLHNEDEIKRLDTRIGDTVIVGRAGDVIPDIKKVLKELRPRNTEEFRMPKK
CPVCGEELKREGVILRCINPKCSARHRESLYHFASRGAFDIDGLGPKIIDAFLDNGLIQD
AADLFALKEGGIRPLERFGEKSAENIIKAIQSRRAIGLVRFILGLGILHVGEETALDLAE
RFASLKALQNASRDDLEAIPNVGGIVAESIHNWFRDAHNKEFLKKLLKYVKVENARGKTK
GRLFAKTFVLTGSLRSLSRDEAKSKIRALAGNVSEAVSSKTDFVVAGSDPGSKYEKAKKL
GVKIIDEKEFLKMLR
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggataagatagaagctcagaagcagatagaaaaattgaggaaggtgataaatcaccac
aggtatctttatcatgttttggaccggcaggaaatttcagatgaggcccttgattcttta
aaacacgaattgaagaagctggaagaccggtttccggatttgattactccggattcgccg
acgcagagagtgggaggaaaagccctgaaagagtttaaaaaggtcaggcacaatgtcccg
atgctttcgcttgaagacgcttttttgcccgaagaaataacggactggatttcccgcaat
tctaaagttgtacgggacgccgggagtgccgctctttttgccgaacttaagtttgacggt
ttagccatgagtttgatttacatagacggggttttggacagggctttaacccgcggagac
ggcagaatcggagaagacgtcactcaaaatgccagaacggttgaagccatacctctgcgt
ttggaaattcgcggcaaggtttccgaagccgtccgtaaagaagccgaaaaaataattaaa
aagggagttatagaggcgaggggcgagattataataaccaaaaaaaatttcgccaaggtt
aatgccgaacaaaaaaaggccggcaagcaaatttttgccaatcccagaaatctggcggca
ggttcaatccgccagcttgattcggcaattaccaaatcgcgccggctggattttcacgcc
tacgacctgattgccgatttcgggcaggttctgcattccgaggaacacgaaatattgtcg
gccctcggttttaaaactgacgaaaaagcgaaaatttttcatgatttgaaatcccttttt
tcatatcgcgaaaaaatagaaagcgaacggagccgttttgaatatgaaacagacggaata
gtcgttagcgttgacgacaatgatttattcgggcgtttgggcgttgtcggcaaaactccg
cgcggagccattgcttttaaatttactccgcatgaatcaacgaccgttattgaagacata
atagtgcaggtggggcgcaccggcgccattacgccggtcgcggtattgaggcccgttcaa
ataggcggggtaaccgtgagccgcgcgactctgcataatgaagatgaaattaaaaggctt
gatacgaggataggcgacactgttattgtcgggcgcgccggcgacgtcattccggatatt
aaaaaagttcttaaagaattaaggccgagaaacacggaagaattccgtatgcccaaaaaa
tgtccggtttgcggggaagaattaaagcgggaaggggtaattttaagatgtattaatccg
aaatgttccgcccgtcaccgcgagtcgctgtatcactttgcttcgcgcggagcttttgac
attgacggcctgggccccaaaataatagacgcctttttggataacggcctgattcaagac
gcggccgaccttttcgcgttgaaagaaggcggtatacggccgcttgaaagattcggagaa
aaatcagccgaaaatatcataaaagccatacaatccaggcgcgccataggtttggttaga
tttattttggggctgggcattcttcatgtcggggaagaaacggctctggatttggccgag
cgattcgcgtctcttaaagccctgcaaaacgcttcaagagatgatttggaagcaataccg
aatgtgggcgggattgtggccgaaagcattcataattggtttcgggacgcgcataacaaa
gaatttttaaaaaaacttttaaaatatgttaaagttgaaaatgcgaggggaaaaaccaag
ggtcggctttttgccaagacctttgttttgaccggaagtttgcggtcgctgtccagagat
gaggccaaatccaaaatccgcgctcttgccggcaatgtttccgaagcggtttcgtcaaaa
accgatttcgtggtcgccggctccgatccgggctcaaaatacgaaaaagccaaaaaattg
ggagttaaaattattgatgaaaaagaatttttaaaaatgttaagataa
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