Nocardia brasiliensis: O3I_032315
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Entry
O3I_032315 CDS
T02270
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nbr
Nocardia brasiliensis
Pathway
nbr03030
DNA replication
nbr03410
Base excision repair
nbr03420
Nucleotide excision repair
nbr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
O3I_032315 (ligA)
03410 Base excision repair
O3I_032315 (ligA)
03420 Nucleotide excision repair
O3I_032315 (ligA)
03430 Mismatch repair
O3I_032315 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nbr03032
]
O3I_032315 (ligA)
03400 DNA repair and recombination proteins [BR:
nbr03400
]
O3I_032315 (ligA)
Enzymes [BR:
nbr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
O3I_032315 (ligA)
DNA replication proteins [BR:
nbr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
O3I_032315 (ligA)
DNA repair and recombination proteins [BR:
nbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
O3I_032315 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
O3I_032315 (ligA)
MMR (mismatch excision repair)
DNA ligase
O3I_032315 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
O3I_032315 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
AFU04412
UniProt:
K0F3T4
LinkDB
All DBs
Position
7317746..7319875
Genome browser
AA seq
709 aa
AA seq
DB search
MSDSSAVDNDTNAPAPATAEQRVRWQQLADEVREHQFRYYVRDSPIITDGEFDTLLRRLQ
AMEEQHPDLLTPDSPTQLVGGGFATDFTAVDHLERMLSLDNVFDFDELRTWASRVEAETG
PDLHYLCEVKIDGVALNLVYENGRLVRGATRGDGRTGEDVTLNARTIEDIPGELTPSAEF
PIPALLEVRGEAYMRLEDFETLNAAIVADGRPPYANPRNTAAGSLRQKDPAVTARRRLRM
ICHGFGRIEGYAPASQHEAYRALAAWGLPVSDHTKLVQGIDAVIERVAYWGEHRHDIEHE
IDGQVIKIDEMALQRRLGSTSRAPRWAIAYKYPPEEATTKLLNIEVNVGRTGRVTPFAVM
EPVSIAGSTVSMATLHNASEVERKGVLIGDTVTIRKAGDVIPEVLGPVVDARTGAERAFV
MPTHCPACGTELAPQKEGDADIRCPNQQFCPAQLRERVFHVAGRGAFDIESLGYEAANDL
LKSGVITDEGDLFDLDESRLLATTLFANKDGGLSANGRRLLDNLDAAKSRPLWRVLVALS
IRHVGPTAARVLAREFGSLDRIQDASAEELAAADGVGPTIAAAVAEWFTVEWHRAIVGKW
RAAGVRMADERDESIERTLEGLSIVVTGSLDGFSRDGAKEAILVRGGKAAGSVSKKTAFV
VIGDAPGSKAAKAEELGVPILDEDGFRLLLEAGPDAVTPQSEIESETEG
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgacagcagtgcggtggacaacgacacgaacgcgcccgccccggcgacggccgag
caacgcgtgcggtggcagcagttggcggacgaggtgcgcgagcatcagttccgctactac
gtgcgcgattcgccgatcatcaccgacggcgagttcgacacgctgctgcgccgcctgcag
gccatggaggaacagcaccccgatctacttaccccggattcgccgacccagctggtcggc
ggcgggttcgcgaccgacttcaccgcggtcgaccacctggagcggatgctgtcgctggac
aacgtgttcgacttcgacgagctgcgcacctgggcgagccgcgtcgaggccgagaccggg
cccgatctgcactatctgtgcgaggtgaagatcgacggcgtcgcgctgaacctggtgtac
gagaacgggcggctggtgcgcggcgcgacccgcggtgacgggcgcacgggcgaggacgtc
acgctcaacgcgcgcaccatcgaggacatcccgggtgagctgacgcccagcgccgagttc
ccgatcccggcgttgctcgaggtgcgcggcgaggcgtacatgcgcctcgaggacttcgag
acgctcaacgcggccatcgtggccgacggcagaccgccgtacgccaatccgcgcaacacc
gcggccggctcactgcggcagaaggacccggcggtcaccgcccgccgccggctgcggatg
atctgccacggcttcggccgcatcgagggctatgccccggcctcgcagcacgaggcctat
cgggcgctggcggcctggggcctgccggtgtccgaccacaccaagctggtgcagggcatc
gacgccgtcatcgaacgggtcgcgtactggggcgagcatcgccacgatatcgagcacgag
atcgacggccaggtcatcaagatcgacgagatggccctgcagcgcaggctcgggtccacc
tcgcgcgcgccacgctgggcgatcgcctacaagtatccgcccgaggaggcgaccaccaag
ctgctcaacatcgaggtgaacgtcggtcgcaccggccgggtcaccccgttcgcggtgatg
gagccggtgtccatcgcggggtcgacggtctcgatggccacgctgcacaacgcgtcggag
gtcgaacgcaagggcgtgctcatcggcgacacggtcaccatccgcaaggcgggcgacgtg
atccccgaggtgctcggcccggtggtggacgcgcgcaccggcgcggagcgcgcgttcgtg
atgccgacgcactgcccggcctgcggcaccgaattggccccgcagaaggagggcgacgcc
gatatccgctgcccgaaccagcagttctgtccagcccagctgcgtgagcgggtgttccac
gtggccgggcgcggcgcgttcgatatcgagtcgctcgggtacgaggcggcgaacgatctg
ttgaagtcgggcgtgatcaccgacgagggtgatctgttcgacctcgatgaatcccgtctg
ctggcgaccacactgttcgccaacaaggacggcgggttgtccgcgaacggccgccgcctc
ctggacaacctggacgcggccaagagccggccgctgtggcgggtgctcgtggcgttgtcg
atccggcatgtcgggcccactgccgcaagggttctggcgcgggagttcggcagtctcgat
cggatccaggacgcctcggccgaggagctggccgccgccgacggggtcggacccaccatc
gcggcggcggtcgcggaatggttcaccgtcgagtggcatcgcgcgatcgtcggcaagtgg
cgcgccgcgggcgtgcggatggccgacgagcgcgacgagtccatcgagcgcacgctcgaa
gggctgtccatcgtcgtcaccggctcgctggacgggttctcccgcgacggcgcgaaggag
gccattctggtgcgcggcggcaaggcggcgggttcggtgtcgaagaagaccgcgttcgtg
gtgatcggtgatgcgccgggctcgaaggcggccaaggcggaggaactcggggtgccgatc
ctcgacgaggacgggttccggctgctgctggaggcggggccggacgcggtgacgccgcag
tccgaaatcgagtccgagacggaagggtaa
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