Sciurus carolinensis (gray squirrel): 124959679
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Entry
124959679 CDS
T08117
Name
(RefSeq) histone-lysine N-methyltransferase SETDB1 isoform X1
KO
K11421
[histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase [EC:
2.1.1.366
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar00310
Lysine degradation
ncar01100
Metabolic pathways
ncar04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
124959679
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
124959679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ncar03036
]
124959679
Enzymes [BR:
ncar01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.366 [histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase
124959679
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
124959679
Heterochromatin formation proteins
Other heterochromatin formation proteins
124959679
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5604
Tudor_4
Tudor_5
MBD
SET
Pre-SET
Chromo_MORC2_6th
DUF4537
BRCA-2_OB3
Chromo
Motif
Other DBs
NCBI-GeneID:
124959679
NCBI-ProteinID:
XP_047373987
LinkDB
All DBs
Position
1:complement(98576482..98606713)
Genome browser
AA seq
1336 aa
AA seq
DB search
MSSLPGCIGLDAATAAVESEEIAELQQAVVEELGISMEELRQFIDEELEKMECVQQRKKQ
LAELETWVIQKESEVAHVDQLFDDASRAVTNCESLVKDFYSKLGLQYRDSSSEDETSRPT
EIIEIPDEDDDVLSIDSGSNPVPHTLLGDAGSRTPKDQKLREAMAALRKSAQDVQKFMDA
VNKKSSSQDLHKGTLSQMSGELSKDGDLIVSMRILGKKRTKTWHKGTLIAIQTVGPGKKY
KVKFDNKGKSLLSGNHIAYDYHPPADKLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNK
LRFLIFFDDGYASYVTQSELYPICRPLKKTWEDIEDISCRDFIEEYITAYPNRPMVLLKS
GQLIKTEWEGTWWKSRVEEVDGSLVRILFLDDKRCEWIYRGSTRLEPMFSMKTSSASALE
KKQGGQLRTRPNMGAVRSKGPVVQYTQDLTSTGTQFKPVEPPQPTAPTAPPAPSVPPASP
LSSQAGDNESLESQLAQSRKQVAKKSTSFRPGSVGSGHSSPTSPALSENAPGGKPGISQT
YRSPLGSTTSAPAPPAPPAPPAPPAPPGPPGPPGPPAPPAPPALPAPPAPPAPPAFHGML
ERAPAEPSYRAPMEKLFYLPHVCSYTCLSRIRPMRNEQYRGKNPLLVPLLYDFRRMTARR
RVNRKMGFHVIYKTPCGLCLRTMQEIERYLFETGCDFLFLEMFCLDPYVLVDRKFQPYKP
FYYILDITYGKEDVPLSCVNEIDTTPPPQVAYSKERIPGKGVFINTGPEFLVGCDCKDGC
RDKSKCACHQLTIQATACTPGGQINPNSGYQYKRLEECLPTGVYECNKRCKCDPHMCTNR
LVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGSFVCIYAGKILTDDFADKEGLEMGDEYFA
NLDHIESVENFKEGYESDVPCSSDSSGVDLKDQEDGNSGTEDPEESNDDSSDDNFCKDED
FSTSSVWRSYATRRQTRGQKENGLSETASKDSRPPDLGPPHLPIPSSIPVGGCNPPSSEE
TPKNKVASWLSCNSVSEGGFADSDSRSSFKTSEGGEGKAGGNRGEAEKASTSGMVIKDEG
DVKQAKKEDSDDRNKMSVVTESTRNYGYNPSPVKPEGLRRPPSKTSMHQSRRLMASAQSN
PDDILTLSSSTESEGESGTSRKPTPGQTSAAAVDSDDIQTISSGSEGDDFEDKKNMSGPT
KRQVAVKSTRGFALKSTHGIAIKSTNMASVDKGESAPVRKNTRQFYDGEESCYIIDAKLE
GNLGRYLNHSCSPNLFVQNVFVDTHDLRFPWVAFFASKRIRAGTELTWDYNYEVGSVEGK
ELLCCCGAIECRGRLL
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccctccctgggtgcattggtttggatgcagcaacagctgcagtggagtcagaa
gagattgcagagctgcaacaggcagtggttgaggagcttggtatctctatggaggaactt
cggcagttcattgatgaagaattggaaaagatggaatgtgtacaacagcgcaagaaacaa
ctagcagagttggagacatgggtaatacagaaagaatctgaagtggctcatgttgaccag
ctctttgatgatgcatccagggcagtgactaattgtgagtctttggtgaaggacttctac
tccaagctgggactacagtaccgggacagtagctctgaggatgaaacttcccgtcccaca
gagataattgagattcctgatgaagatgatgatgtcctcagtattgattcaggatcgaac
ccagtgcctcacacattgctaggtgatgctggcagcagaactccaaaagatcagaagctc
cgtgaggctatggctgccttaagaaaatcagcccaggatgtccagaagttcatggatgct
gtcaataagaagagcagttcccaggatttacataaaggaaccttgagtcagatgtctgga
gaactgagcaaagatggtgacctgatagtcagcatgcggattcttggcaagaagagaact
aagacgtggcacaaaggcacccttattgccatacagacagttgggccaggaaagaaatat
aaggtgaaatttgacaacaaaggaaagagtctgctttcagggaaccatattgcctatgat
taccaccctcctgctgacaagctatatgtgggtagtcgagtggtggccaaatacaaagat
gggaatcaggtgtggctgtatgctggcattgtggctgagacaccaaacgtcaaaaataag
ctcaggtttcttattttctttgacgatgggtatgcttcctatgtcacacagtcagaactc
tatcccatttgccggcccttgaaaaagacttgggaggacattgaagacatctcctgccga
gacttcatagaggagtatatcactgcttaccccaaccgacccatggtgctgctcaagagc
ggccagcttatcaagactgagtgggaaggcacgtggtggaaatcccgagttgaggaagtg
gatggcagcctagtcaggatcctcttcctggatgacaaaagatgtgagtggatctatcga
ggctctacacgactggagcccatgttcagcatgaagacatcttcagcctctgcactggag
aaaaagcaagggggacagctcaggacacgtccaaatatgggtgctgtgaggagcaaaggc
cctgttgtccagtacacacaggatctgaccagtactggaacccagttcaaaccagtggag
cccccacagcctacagctcctacagctccacctgccccctctgtcccacctgcttcacct
ctgtcctcccaggcaggtgacaatgaaagcttggaaagccagcttgctcagtcacggaag
caggtagccaaaaagagcacatccttccgaccaggatctgtgggttctggtcattcctct
cctacgtctcctgcactcagtgaaaatgcccctggtgggaaacctgggatcagtcagact
tacagatcgccattaggctcaacaacctctgccccagcacctccagcccctccagcccct
ccagcccctccagcccctccaggtcctccaggtcctccaggtcctccggcccctccagcc
cctccagctcttccagctcctccagcccctccagcccctccagccttccatggtatgctg
gagcgggccccagcagagccttcctaccgtgcccccatggaaaagcttttctacttacct
catgtctgcagctatacttgtctgtctcggatcagacctatgaggaatgagcagtaccgg
gggaagaaccctctgttagtcccactgctgtatgacttccggaggatgacagcccgtcgt
cgagttaatcgcaagatgggttttcatgttatttataagacaccttgtggcctctgcctt
cggacaatgcaggagattgaacgctacctttttgagactggatgtgacttccttttcctg
gagatgttctgtttggatccgtatgttcttgtggaccggaagtttcagccctataagcct
ttttactatattttggacatcacttatggaaaggaagatgttcccctctcttgtgtcaat
gaaattgacacaactcccccaccccaggtggcctatagcaaggaacgtatcccaggcaag
ggtgttttcattaacacaggccctgaatttctggttggctgtgactgtaaggatgggtgt
cgtgacaagtccaagtgtgcctgccatcagctgactatccaggctacagcctgcaccccc
gggggccaaatcaaccctaactctggctaccagtacaagagactagaagagtgtctgccc
acaggggtttatgaatgtaacaaacgctgtaaatgtgatccacacatgtgcacaaaccga
ttggtacagcatggactacaggttcggctacaactattcaagacacagaacaagggctgg
ggtatccgctgcttggatgacattgccaaaggctcttttgtttgtatttatgcaggcaaa
atcctgacagatgactttgctgacaaggaaggtctagaaatgggtgatgagtattttgca
aatttggaccatatagagagtgtggagaacttcaaggaaggatatgagagtgatgtcccc
tgttcctctgacagcagtggtgtagatttgaaggaccaagaagatggcaacagtggtaca
gaggatcctgaagagtccaatgatgatagctcagatgataacttctgtaaggatgaggac
ttcagcaccagctcagtttggcgcagctatgctacccggaggcagacccggggccagaag
gagaatggattgtctgagacagcttccaaggattctcgtcccccagaccttgggccccca
catcttcctatcccttcctcaattcctgtagggggctgtaatccaccttcctccgaagag
acacccaagaacaaagtggcctcatggttgagctgcaatagtgtcagcgaaggtggtttt
gctgactctgatagccgttcatccttcaagactagtgaaggtggggagggcaaggctggg
ggaaatcgaggggaggctgagaaggcctctacttcaggaatggtcatcaaggatgaagga
gatgtcaaacaggctaagaaagaggactctgatgaccgaaacaagatgtcagtagttact
gaaagcactcgaaattatggttacaatccttctcctgtgaagcctgaaggacttcgacgc
ccacctagtaagactagtatgcatcagagccggcgactcatggcctcagcccagtccaac
cctgatgatatcctgacactgtccagcagcacagaaagtgagggggaaagtggaaccagc
agaaagcccactcctggtcagacgtcagccgcagcagttgacagtgatgatatccagacc
atctcctctggctctgaaggggatgactttgaggacaagaagaacatgtctggtccaaca
aagcgccaggtggcagtgaaatcaacccggggctttgctcttaaatcaacccatgggatt
gccattaaatcaaccaacatggcctctgtggacaagggggaaagtgcacctgttcggaag
aacacacgccagttctatgatggtgaagagtcttgctacatcattgatgccaagcttgaa
ggcaacctgggccgctacctcaatcacagttgcagccccaacctgtttgttcagaatgtc
ttcgtggatacccatgatcttcgcttcccttgggtggccttctttgccagcaagagaatc
cgggctggaacagaacttacttgggactacaactatgaggtgggcagtgttgaaggcaag
gagctgctctgctgctgtggagccatcgaatgcagagggcgtcttctttag
DBGET
integrated database retrieval system
