Sciurus carolinensis (gray squirrel): 124959952 Help Entry 124959952         CDS       T08117                                  Name (RefSeq) TNF receptor-associated factor 6   KO K03175   TNF receptor-associated factor 6 [EC:2.3.2.27] Organism ncar  Sciurus carolinensis (gray squirrel) Pathway ncar04010   MAPK signaling pathway ncar04064   NF-kappa B signaling pathway ncar04120   Ubiquitin mediated proteolysis ncar04140   Autophagy - animal ncar04144   Endocytosis ncar04380   Osteoclast differentiation ncar04620   Toll-like receptor signaling pathway ncar04621   NOD-like receptor signaling pathway ncar04622   RIG-I-like receptor signaling pathway ncar04657   IL-17 signaling pathway ncar04722   Neurotrophin signaling pathway ncar04936   Alcoholic liver disease ncar05132   Salmonella infection ncar05133   Pertussis ncar05135   Yersinia infection ncar05140   Leishmaniasis ncar05142   Chagas disease ncar05145   Toxoplasmosis ncar05152   Tuberculosis ncar05160   Hepatitis C ncar05161   Hepatitis B ncar05162   Measles ncar05168   Herpes simplex virus 1 infection ncar05169   Epstein-Barr virus infection ncar05170   Human immunodeficiency virus 1 infection ncar05171   Coronavirus disease - COVID-19 ncar05200   Pathways in cancer ncar05222   Small cell lung cancer ncar05235   PD-L1 expression and PD-1 checkpoint pathway in cancer ncar05417   Lipid and atherosclerosis Brite KEGG Orthology (KO) [BR:ncar00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     124959952  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     124959952    04064 NF-kappa B signaling pathway     124959952  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     124959952    04140 Autophagy - animal     124959952  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     124959952    04621 NOD-like receptor signaling pathway     124959952    04622 RIG-I-like receptor signaling pathway     124959952    04657 IL-17 signaling pathway     124959952   09156 Nervous system    04722 Neurotrophin signaling pathway     124959952   09158 Development and regeneration    04380 Osteoclast differentiation     124959952  09160 Human Diseases   09161 Cancer: overview    05200 Pathways in cancer     124959952    05235 PD-L1 expression and PD-1 checkpoint pathway in cancer     124959952   09162 Cancer: specific types    05222 Small cell lung cancer     124959952   09172 Infectious disease: viral    05170 Human immunodeficiency virus 1 infection     124959952    05161 Hepatitis B     124959952    05160 Hepatitis C     124959952    05171 Coronavirus disease - COVID-19     124959952    05162 Measles     124959952    05168 Herpes simplex virus 1 infection     124959952    05169 Epstein-Barr virus infection     124959952   09171 Infectious disease: bacterial    05132 Salmonella infection     124959952    05135 Yersinia infection     124959952    05133 Pertussis     124959952    05152 Tuberculosis     124959952   09174 Infectious disease: parasitic    05145 Toxoplasmosis     124959952    05140 Leishmaniasis     124959952    05142 Chagas disease     124959952   09166 Cardiovascular disease    05417 Lipid and atherosclerosis     124959952   09167 Endocrine and metabolic disease    04936 Alcoholic liver disease     124959952  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:ncar04131]     124959952    04121 Ubiquitin system [BR:ncar04121]     124959952 Enzymes [BR:ncar01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      124959952 Membrane trafficking [BR:ncar04131]  Endocytosis   Clathrin-mediated endocytosis    Ubiquitin E3 ligases     124959952 Ubiquitin system [BR:ncar04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     124959952 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 zf-TRAF TRAF6_Z2 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_2 zf-C3HC4_3 zf-C3HC4_4 zf-RING_5 zf-TRAF_2 Sina_ZnF TRAF3_RING RING_XB3-XBAT31 SlyX zf-RING_11 U-box Spc29 DUF4455 UPF0242 PspA_IM30 Myosin_tail_1 EzrA Filament DUF16 DUF7310 Exonuc_VII_L TMF_DNA_bd ATG16 Motif Other DBs NCBI-GeneID:  124959952 NCBI-ProteinID:  XP_047374413 LinkDB All DBs Position 11:41648676..41666656 Genome browser AA seq 530 aa AA seqDB search MSLLNCENSSGSNQSESNCCAAMANSCSAAVKDDSVSGSASTGNLSSSFMEEIQGYDVEF DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD NFAKREILSLTVKCPNEGCLHKMELRHLEDHQAHCDFALMNCPQCQRAIQKCQFNIHILK DCPRRQVSCVNCAMSMAFEDKEIHDQNCPLANVICEYCNTMLIREQMPNHYDLDCPTAPI PCTFSTFGCHEKMQRNHLARHLQENTQLHMRMLAQAVHSLNLAFDAASPSQMPSGYRPEI ENFQEIIQQLEGRLVRQDHQIRELTAKMETQSMYVSELKRTIRTLEDKVAEIEAQQCNGI YIWKIGNFGMHLKSQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVH TMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFG YVTFMHLEALRQRTFIKDDTLLVRCEVSTRFDMGGLRKEGFQARSTDAGV NT seq 1593 nt NT seq  +upstreamnt  +downstreamnt atgagtctgttaaactgtgaaaacagctctgggtccaaccagtctgaaagtaactgctgt gctgccatggccaactcctgcagcgctgcagtcaaagatgacagtgtgagtggaagtgcc agcacagggaatctctccagctcctttatggaagagatccagggatatgatgtagagttt gacccacctctggaaagcaagtacgaatgccctatctgcttgatggctttacgggaagca gttcaaacaccatgtggccataggttctgcaaagcctgcatcatcaaatccataagggat gcaggtcacaagtgtccagttgacaatgaaatactgctggaaaatcaactctttcctgac aattttgcaaaacgagagattctttctcttacggtaaagtgtccaaatgaaggttgtttg cacaaaatggaactgaggcatcttgaggatcatcaagcacattgtgattttgctcttatg aattgtccccaatgccagcgtgccatccaaaaatgccaatttaatattcacattcttaag gattgtccaaggagacaggtttcttgtgtaaactgtgctatgtccatggcatttgaagat aaagagatccatgaccagaactgtcctttggcaaacgtcatctgtgaatactgcaatacc atgctcatcagagaacagatgcctaatcattatgatctagattgtccaacggccccaatt ccgtgtactttcagtacttttggttgccatgaaaagatgcagaggaatcacttggcccgc cacctgcaagagaatacccagttacacatgagaatgttggcccaggctgttcacagttta aaccttgcttttgatgctgcctctccctcccagatgccttctgggtatcgcccagagatt gaaaatttccaggaaatcattcaacagttggagggtcgccttgtaagacaggaccatcaa atccgggagctgaccgctaaaatggaaactcagagtatgtatgtaagtgagctcaaacga acaattcgaacccttgaggacaaagtcgctgaaattgaagcacaacagtgcaatgggatt tatatttggaagattggtaactttgggatgcacttgaaatcacaagaagaggagaaacct gtggtcattcatagtcctggattctacacaggcaaacctggatataaactgtgtatgcgc ctgcaccttcagttaccaactgctcagcggtgtgcaaactacatctcactctttgtgcac acaatgcaaggagagtatgacagccacctcccttggcccttccaaggtacaatacgtctt acaattcttgatcagtctgaagcacctgtaaggcagaatcatgaagaaataatggatgcc aaaccagagctgcttgctttccagcggcccacaatccccaggaacccaaaaggttttggc tatgtaacttttatgcacctggaagccctaagacaaagaaccttcattaaggatgatacg ttattagtgcgttgtgaagtctctacccgctttgacatgggtggacttcggaaggagggt tttcaggcacgaagtacagatgcaggggtgtag

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