Sciurus carolinensis (gray squirrel): 124961973
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Entry
124961973 CDS
T08117
Name
(RefSeq) ATP-dependent RNA helicase A isoform X1
KO
K13184
ATP-dependent RNA/DNA helicase DHX9 [EC:
5.6.2.6
5.6.2.4
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncar03041
]
124961973
03012 Translation factors [BR:
ncar03012
]
124961973
Enzymes [BR:
ncar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
124961973
5.6.2.6 RNA 3'-5' helicase
124961973
Spliceosome [BR:
ncar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
124961973
Translation factors [BR:
ncar03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124961973
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
OB_NTP_bind
Helicase_C
DEAD
HA2_N
HA2_C
Dicer_dimer
nSTAND3
AAA_19
ResIII
ATPase
AAA_14
AAA_22
Motif
Other DBs
NCBI-GeneID:
124961973
NCBI-ProteinID:
XP_047376993
LinkDB
All DBs
Position
12:complement(103076037..103117218)
Genome browser
AA seq
1325 aa
AA seq
DB search
MGDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNYTGMGNSTNKKDAQSN
AARDFVNYLVRINEVKSEEVPAMGIAPPPPTVTAETSDTTTTSTGGDLPTTMGGPLPPHL
ALKAAENNSGGASGYGAPVPTWDRGANLKDYYSRKEEQEVQATLESEEVDLNAGLHGNWT
LENAKARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL
AAQSCALSLVRQLYHLGVIEAYSGLTKKKEGETVEPYRVNISQDLEHQLQNVIQELNLEI
VPPPIDPSMPVMLNIGKLAHFEPSQRQNQVGVVPWSPPQSNWNPWTSSNIDEGPLAYATP
EQISLDLKNELMYQLEQDHDLQAVLQERELLPVKKFESEILEAISQNSVVIIRGATGCGK
TTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAYERGEEPGKSCGYSVRFES
ILPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVLAYPEV
RIVLMSATIDTSMFCEYFFNCPIIEVYGRTYPVQEYFLEDCIQMTQFVPPPKDKKKKDKE
DDGGEDDDANCNLICGDEYGPETKMSMSQLNEKETPFELIEALLKYIETLNVPGAVLVFL
PGWNLIYTMQKHLEMNPHFGTHRYQILPLHSQIPREEQRKVFDPVPVGVTKVILSTNIAE
TSITINDVVYVIDSCKQKVKLFTAHNNMTNYATVWASKTNLEQRKGRAGRVRPGFCFHLC
SRARFERLETHMTPEMFRTPLHEIALSIKLLRLGGIGQFLAKAIEPPPLDAVIEAEHTLR
ELDALDVNDELTPLGRILAKLPIEPRFGKMMIMGCIFYVGDAVCTISAATCFPEPFISEG
KRLGYIHRNFAGNRFSDHVALLSVFQAWDDARMSGEEAEIRFCEHKRLNMATLRMTWEAK
VQLKEILINSGFPEDCLLTQVFTNTGPDNNLDVVISLLAFGVYPNVCYHKEKRKILTTEG
RNALIHKSSVNCPFSSQDMKYPSPFFVFGEKIRTRAISAKGMTLVTPLQLLLFASKRVQS
DGQIVFVDDWIRLQISHEAAACITALRAAMEALVVEVSKQPNIISQLDPVNEHMLNMIRQ
ISRPSAAGINLMIGSARYGDGPRPPKMARYDNGSGYRRGVSGYGGGGYGTGGYGSGYSSG
GFGGGGYGGGGGGGGGGGYGAGGGYGGGSNSYRGGYGGGGGGGYRGGFRGGFRGNFGGDY
RGSGGDYRGSGGDYRGSGGDYRGCGGDYRGSGGGGYRGSGGFQRGGGRGGYGGGYFGQGR
GGGGY
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
atgggtgacgttaaaaattttctgtatgcctggtgtggcaaaaggaagatgactccatcg
tatgaaattagagcagtagggaacaaaaacaggcagaaattcatgtgtgaggttcgggta
gaaggatataattacacgggcatgggcaactccaccaataaaaaagatgcacagagcaat
gctgccagagactttgttaactatttggttcgaataaatgaagtaaagagtgaagaagtc
ccagctatggggattgctcctcctccacctacagttactgctgagacatctgacaccacc
acaacaagtactggaggagatttgccaacaaccatgggaggacctcttcctccacatttg
gctctcaaggcagcagaaaataattctggaggagcatctggctatggtgctcctgtaccc
acctgggaccggggagccaacttgaaagattactactcaagaaaggaggaacaagaagta
caagcgactctagagtcagaagaagtagatttaaatgctggacttcatggaaactggacc
ttggaaaatgctaaggctcgtctgaaccagtatttccagaaagaaaagatccaaggagaa
tataaatacacccaagtgggtcccgatcacaacaggagctttattgcagaaatgaccatt
tatatcaagcagctgggcagaaggatttttgcacgtgaacacggatcaaataagaaattg
gcagcacaatcctgtgccctatcacttgtccgacagctgtatcatcttggagtgattgaa
gcttactctggacttacaaagaagaaagaaggagagacagtggagccttatagagttaac
atctctcaagatttagagcatcaactgcaaaatgtgatccaagagctaaaccttgaaata
gtgcccccacctattgatccttctatgccagttatgctcaacattggaaaattggctcac
tttgaaccttctcagcgtcaaaatcaagtgggtgtggttccttggtcacctccacaatcc
aactggaatccttggactagtagcaacattgatgagggtcccctggcttacgctactcca
gaacaaataagcttggatctgaagaatgaattaatgtaccagctggaacaggatcatgat
ttgcaagcagtcttgcaggagagagaattacttcctgtgaagaaatttgaaagtgaaatt
ctggaagcaattagtcaaaattcagttgtcattatccgaggggctactggatgtggtaaa
actacacaggttccacagttcattctggatgactttatccagaatgaccgagcagcagag
tgtaatatcgtagtaactcaacccaggagaatcagtgcagtttctgtggcagagcgagtt
gcatatgagagaggagaagagcctggaaaaagctgtggctatagtgttcgatttgagtct
atacttccccgtcctcatgccagtataatgttttgtactgtaggtgtgcttctcagaaag
ttagaagcaggcattcgaggaatcagtcatgtaattgtagacgaaatacacgaacgagac
attaatactgacttccttttggtagtattgcgtgatgtggttttggcttatcctgaagtt
cgcattgttcttatgtctgctactattgataccagcatgttctgtgaatatttcttcaat
tgccccataattgaagtttatgggaggacttacccagttcaagaatattttctggaagat
tgtattcagatgacccagtttgttcctccaccaaaggacaagaaaaagaaggacaaggag
gatgatggtggtgaggatgatgatgcaaactgcaacctgatctgtggtgatgaatatggt
ccagaaacaaaaatgagcatgtctcagttgaatgaaaaggaaactccttttgaactcatt
gaagctcttcttaagtacattgaaacccttaatgttcctggcgctgtgctggttttttta
cctggctggaatttgatttatactatgcaaaagcatttggaaatgaatccacattttgga
actcataggtatcagattctacctctgcactctcagatacctcgagaggaacagcgcaaa
gtatttgatcctgtaccagttggtgtaaccaaggtcattttgtccacaaatattgctgag
acaagcattactattaatgatgttgtttatgttattgactcttgcaagcagaaagtgaaa
ctcttcactgctcacaacaatatgaccaactatgctacagtatgggcatccaaaacaaac
cttgaacaacggaaaggccgagctggccgggtacggcctggattctgttttcacctctgt
agtcgagctcgatttgagagacttgaaacccacatgacaccagagatgttccgaacacca
ttgcatgaaattgctttgagcataaaacttctgcgtctaggaggaattggccaattcctg
gcaaaggcaattgaacctccgcctttggatgctgtgattgaagcagagcacactcttaga
gagcttgatgcattggatgtcaatgatgagttgactcctttgggacgaatcctggctaag
ctccccattgagcctcgctttggcaaaatgatgataatggggtgtattttctatgtgggc
gatgctgtgtgtaccatctctgcagccacctgctttcctgagcctttcattagtgagggg
aagcgcctaggctatatccatcggaactttgctggaaacagattttctgatcatgtggcc
cttttgtcagtgttccaagcctgggatgatgcgagaatgagtggagaagaagcagagata
cggttttgtgaacacaaacgtctcaatatggctacactgagaatgacttgggaagctaaa
gttcagcttaaagaaattctgattaattctggatttccagaagattgtttgttgacacaa
gtttttactaacactggaccagataataatttggatgttgttatttctctcctggccttt
ggcgtgtaccctaacgtatgctatcataaggaaaagagaaagattcttactactgaaggg
cgtaatgcactcatccacaaatcttcggttaattgtccttttagtagccaagacatgaag
tacccttctccattctttgtatttggtgaaaaaattcgaacccgagccatttctgctaaa
ggcatgaccttagtcacccccttgcagttgcttctctttgcttctaagagagtccagtct
gatgggcagattgtgtttgtagatgactggatcaggctgcaaatatcccatgaagctgct
gcctgcatcactgccctccgggcagcaatggaagctctggttgttgaagtaagcaaacaa
cctaatatcatcagccagttggaccctgtaaatgaacatatgcttaacatgattcgccag
atctctaggccatcagctgccggtataaaccttatgattggcagtgcacggtatggagat
ggtccacgtcctcccaagatggcccgatatgataatggcagtggatatagaaggggagtt
tctggatatggtggtggaggctatggcactggaggctatggtagtggctatagcagtgga
ggttttggtggcggaggctatggaggtggtggaggtggcggtggtggtggcggctatgga
gcaggtggaggctatggtggaggctccaactcctatcgaggaggatacggtggaggtggt
ggtggtggttacagaggaggtttccgaggaggttttaggggaaactttggtggagactac
agaggatctggaggagactacagaggatctggtggagactatagaggatctggtggagac
tacagaggatgtggtggagattatagaggatctggtggagggggctacagaggatctggg
ggattccagcgaggcggtggcagggggggctatggaggtggctactttgggcaaggaaga
ggaggaggtggttattaa
DBGET
integrated database retrieval system
