Sciurus carolinensis (gray squirrel): 124963089
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Entry
124963089 CDS
T08117
Name
(RefSeq) otoferlin isoform X1
KO
K19949
otoferlin
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncar04131
]
124963089
Membrane trafficking [BR:
ncar04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
124963089
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
Ferlin_C
FerB
dsrm_Ferlin
FerI
Motif
Other DBs
NCBI-GeneID:
124963089
NCBI-ProteinID:
XP_047378502
LinkDB
All DBs
Position
13:73792294..73878865
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AA seq
1998 aa
AA seq
DB search
MALLVHLKTVSELRGRGDRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASNIDRTE
MLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENHVEVTDTLIDDNNAIIKTSLCVEVRYQA
TDGTVGSWDDGDFLGDESLQEEEKDSQETDGLLPGSRPSSRPPGEKSFRRAGRSVFSAMK
LGKNRPHKEDPQRQDEPAVLEMEDLDHLTVRLGDGLDPDSVSLASVTALTTNVSNKRSKP
DIKMEPSAGRPMDYQVSITVIEARQLVGLNMDPVVCVEVGDDKKYTSMKESTNCPYYNEY
FVFDFHVSPDVMFDKIIKISVIHSKNLLRSGTLVGSFKMDVGTVYSQPEHQFHHKWAILS
DPDDISAGLKGYVKCDIAVVGKGDNIKTPHKANETDEDDIEGNLLLPEGVPPERQWARFY
VKIYRAEGLPRMNTSLMANVKKAFIGENKDLVDPYVQVFFAGQKGKTSVQKSSYEPLWNE
QVVFTDLFPPLCKRMKVQIRDSDKVNDVAIGTHFIDLCKISNDGDKGFLPTLGPAWVNMY
GSTRNYTLLDEHQDLNEGLGEGVSFRARLMLALAVEILDTSNPELTSSTEVQVEQATPVS
ESCTGKMEEFFLFGAFLEASMIDRKNGDKPITFEVTIGNYGNEVDGLARPQRPQPRKEPG
DEEEVDLIQNSSDDEGDDGGDLASVSSTPPMRPQITDRNYFHLPYLERKPCIYIKSWWPD
QRRRLYNANIMDHIADKLEEGLNDVQEMIKTEKSYPERRLRGVLEELSCGCHHFLSLADK
DQGHSSRTRLDRERLKSCMRELESMGQQARSLRAQVKRHTVRDKLRLCQNFLQKLRFLAD
EPQHSIPDVFIWMMSSNKRVAYARVPSKDLLFSIVEEELGKDCAKVKTLFLKLPGKRGFG
SAGWTVQAKLELYLWLGLSKQRKDFLCGLPCGFEEVKAAQGLGLHSFPPISLVYTKKQAF
QLRAHMYQARSLFAADSSGLSDPFARVFFINQSQCTEVLNETLCPTWDQMLVFDNLELYG
EAHELRDDPPIIVIEIYDQDSMGKADFMGRTFAKPLVKMADEAYCPPRFPPQLEYYQIYR
GNATAGDLLAAFELLQIGPAGKADLPPINGPVDVDRGPIMPVPVGIRPVLSKYRVEVLFW
GLRDLKRVNLAQVDRPRVDIECAGKGVQSSLIHNYKKNPNFNTLVKWFEVDLPENELLHP
PLNIRVVDCRAFGRYTLVGSHAVSSLRRFIYRPPDRSAPNWNTTVRLLQGYHVLCNGGPF
SRPTGEIVVSMEPEVPVKKLETMVKLDATSDAIIKVDVAEEEKERKKKKKKGTTEEPEEE
EPDESMLDWWSKYFASIDTMKEQLRQQEASGIELEEKEEMDSTEGLKGPMKGKEKARATK
EEKKKRAQGPSPGPGSEAPEKKKPKIDELKVYPKELESEFDDFEDWLHTFNLLRGKTGDS
EDGATEEERTVGRFKGSLCVYKVPLPEDVSREAGYDPTYGMFQGIPSNDPINVLVRVYVV
RATDLHPADINGKADPYIAIRLGKTDIRDKENYISKQLNPVFGKSFDIEASFPMESMLTV
AVYDWDLVGTDDLIGETKIDLENRFYSKHRATCGIASTYSTHGYNIWRDPMKPSQILTRL
CKEGKVDGPHFGPPGRVKVANRVFTGPSEIEDENGQRKPTDEHVALSALRHWEDIPRVGC
RLVPEHVETRPLLNPDKPGIEQGRLELWVDMFPMDMPAPGTPLDISPRKPKKYELRVIVW
NTDEVVLEDDDFFTGEKSSDIFVRGWLKGQQEDKQDTDVHYHSLTGEGNFNWRYLFPFDY
LAAEEKIVISKKESMFSWDETEYKIPARLTLQIWDADHFSADDFLGAIELDLNRFPRGAK
TAKQCTMEMATGEVDVPLVSIFKQKRVKGWWPLLARNENDEFELTGKVEAELHLLTAEEA
EKNPVGLARNEPDPLEKPNRPDTAFVWFLNPLKSIKYLICTRYKWLIIKVVLALLGLLML
ALFLYSLPGYMVKKLLGA
NT seq
5997 nt
NT seq
+upstream
nt +downstream
nt
atggccctgctcgtccacctcaagaccgtctcggagcttcggggcaggggcgaccggatc
gccaaagtgactttccgagggcagtccttctactcccgggtcctggagaactgcgaggat
gtggctgacttcgatgagacgttccggtggccagtggccagcaacatcgacagaaccgag
atgcttgagattcagattttcaactacagcaaagtcttcagcaacaagctgatcgggact
ttccgcatggtgctgcagaaggtggtggaggagaaccacgtggaggtgacggatactctg
atcgatgacaacaatgctatcatcaagaccagcctgtgtgtggaggttcgatatcaggct
acagacggcacggtgggctcctgggatgacggagacttcctgggggatgagtctcttcaa
gaggaagagaaggacagtcaggagacggatgggctgctccctggctcccgccccagctcc
cggccaccgggcgagaagagcttccggagagccgggaggagcgtgttctccgccatgaag
ctcggcaagaaccggccccacaaggaggacccgcaaagacaagatgaaccagctgtgctt
gagatggaggaccttgaccacctgaccgttcgactgggggatgggctggatcctgactcg
gtgtcgctagcctcggtcactgctctcaccaccaatgtctccaacaagcgatctaagcca
gacattaagatggagccaagtgccggacggcccatggattaccaggtcagcatcacagtg
atcgaggctcggcagctagtgggtttgaacatggatcccgtggtgtgcgtggaggtgggc
gacgacaagaagtacacatccatgaaggagtccaccaactgcccctactacaatgagtac
ttcgtcttcgacttccacgtctctcctgacgtcatgttcgacaagatcatcaagatctcg
gtgatccactccaagaacctgctgcgcagcggcaccctggtgggctccttcaaaatggac
gtggggactgtgtactcccagcctgagcaccagttccatcacaagtgggccatcctgtca
gaccctgatgacatctcggctgggctgaagggctatgtgaagtgtgacatcgctgtggtg
ggcaagggggacaacatcaagacaccccacaaggccaacgagacagacgaggatgacatt
gaggggaacttgctgctccccgagggggtccccccagaacgccagtgggcccggttctac
gtgaaaatttaccgtgcggaggggctgccccgaatgaacacgagcctcatggccaacgtg
aagaaggctttcatcggggaaaacaaggacctcgtcgacccctacgtgcaggtcttcttt
gctggccagaagggcaagacttcagtgcagaagagcagctacgagcccctgtggaatgaa
caagtcgtcttcacagacctgttccccccactctgcaaacgcatgaaggtgcagatccga
gactccgacaaggtcaacgacgtggccatcggcacccacttcatcgacctgtgcaagatt
tccaatgatggagacaaaggcttcctgcccacactgggtccagcctgggtcaacatgtac
ggctccacacgcaactacacgctgctggacgagcaccaggacctgaacgagggcctgggg
gagggcgtgtccttccgtgcccgcctcatgctggccctggctgtggagatcctggacacc
tccaaccccgagctcaccagctccacagaggtgcaggtggagcaggccacacctgtctca
gagagctgcacagggaaaatggaagaattctttctatttggagctttcctggaggcctca
atgatcgacaggaaaaatggagacaaaccaatcacctttgaggtgaccataggcaactat
gggaacgaggtggatggcctagcccgaccacagcggcctcagcccagaaaggaacctggg
gatgaggaggaagtagacctgatccagaactccagtgacgatgagggtgacgatggtggg
gacctggcctcagtgtcctccaccccacccatgcggccccagatcacagataggaactat
ttccatctgccctacctggagcgtaagccctgcatctacatcaagagctggtggccagac
cagcgccgacgcctgtacaacgccaacatcatggaccacatcgctgacaagctggaagaa
ggactgaatgacgtacaggagatgatcaaaacggagaagtcctaccctgagcgtcgcctg
cggggagtcctggaggagctcagctgtggctgccaccacttcctctccctggctgacaag
gaccagggccactcatcacgcaccaggctggatcgggagcgcctcaagtcctgcatgagg
gagctggagagcatggggcagcaggccaggagcctgcgggctcaggtgaagcggcacacg
gtgcgcgacaagctgaggctgtgccagaacttcctacagaagctgcgcttcctggcagac
gagccccagcacagcatcccggacgtcttcatctggatgatgagcagcaacaagcgggtg
gcctacgcccgggtgccctccaaggacctgctcttctccatcgtggaggaggagctgggc
aaggactgcgccaaggtcaagaccctcttcctcaagctgccagggaagcggggcttcggc
tcagcgggctggacagtgcaggccaagctggagctctacctgtggctgggcctcagcaag
cagcggaaggacttcctgtgcggcctgccctgtggcttcgaagaggtcaaggcagcccag
ggcctggggcttcactccttcccgcccatcagcctggtctacaccaagaagcaggccttc
cagctccgagctcacatgtaccaggcccgcagcctctttgccgccgacagcagcgggctt
tctgaccccttcgcgcgtgtcttcttcatcaaccagagccagtgcaccgaggtgctgaat
gagacactgtgccccacctgggatcagatgctggtgtttgacaacctggagctgtatgga
gaagcgcatgagttgcgggatgatccccccatcattgtcattgaaatctacgaccaggac
agcatgggcaaagctgacttcatgggccggacctttgccaagcccctggtgaagatggca
gatgaggcatactgcccaccccgcttcccaccccagctggagtactaccagatctaccgt
ggcaacgccacggccggagacctactggctgccttcgagctgctgcagattgggccagca
ggaaaggcggacctgcccccgatcaacggcccggtggacgtggaccgaggacccatcatg
cctgtgcctgtgggcatccggcccgtgctcagcaagtaccgagtggaggtgctgttctgg
ggccttcgggacctgaaacgggtgaacctggcccaggtggaccgaccgcgggtggacatc
gagtgtgcagggaagggggtgcagtcatccctgatccacaattacaagaagaaccccaac
ttcaacaccctggtcaagtggtttgaagtggacctcccagagaatgagctactgcacccg
cccctgaacatccgcgtggtggactgtcgcgcctttggccgctacacactggtgggctcc
cacgccgtcagctccctgcgtcgcttcatctaccggcccccagaccgctcggcccccaac
tggaacaccacggtcaggcttctccagggctaccatgtgctttgcaatgggggacccttc
tctcgccccacaggggagattgtagtgagcatggaaccagaggtgccggtcaagaaactg
gagaccatggtgaagctggacgcgacttccgatgccatcatcaaggtggatgtggctgaa
gaggagaaggagaggaagaagaagaagaagaaaggcaccacggaagagccagaggaagag
gagcccgacgagagcatgctggactggtggtccaagtactttgcctccattgacaccatg
aaggagcaacttcgacagcaagaggcgtcgggcattgagctggaggagaaggaagaaatg
gacagcaccgagggcctgaaggggcccatgaagggcaaggagaaggcaagggccacaaag
gaggagaagaagaagagagcccagggccccagccccggcccggggtctgaggcacctgag
aaaaagaaacccaagattgatgagctgaaggtgtaccccaaggagctggagtcagagttc
gatgacttcgaggactggctgcacacgttcaacctgctgcggggcaagacgggggactcc
gaggacggcgccaccgaggaagagcgcactgtgggtcggttcaagggctccctctgtgtg
tacaaagtgccactcccggaggatgtgtccagggaagctggttacgaccccacctacggc
atgttccagggcatcccgagcaatgaccccatcaacgtgctggttcgagtctatgtggtc
cgggccacggacctgcaccctgcggacatcaacggcaaagcggacccctacattgccatc
cggctgggcaagaccgacatccgcgacaaggagaactacatctccaagcagctcaaccct
gtctttgggaagtcctttgacatcgaggcctccttccccatggaatccatgctgaccgtg
gctgtgtacgactgggacctcgtgggcactgacgacctcattggggagaccaagatcgac
ctggagaaccgcttctacagcaagcaccgcgccacctgtgggatcgcgagcacctactcc
acacatggctacaatatctggagggaccccatgaagcccagccagatcctgacccgcctc
tgtaaagaaggcaaagtagacggcccccactttgggccccccgggagagtgaaggtggcc
aaccgcgtcttcactgggccctctgaaatcgaggatgagaacggtcagaggaagcccacg
gatgagcatgtggccctgtctgccctgaggcattgggaggacatcccccgagtgggctgc
cgcctggtgccagaacacgtggagaccaggccactgctgaaccccgacaagccgggaata
gagcagggccgcctggagctgtgggtggacatgttccccatggacatgccagcccctggg
acgcctctggacatctcccccaggaagcccaagaagtacgagctgcgggtcatcgtgtgg
aacacggacgaggtggtcctggaggacgacgacttcttcactggagagaagtccagtgac
atttttgtccgggggtggctcaagggccagcaggaggacaagcaggacacggacgtccac
tatcactccctcactggtgagggcaacttcaactggcgatacctgttccccttcgactac
ctggccgctgaggagaaaattgtcatctccaagaaggagtccatgttctcctgggatgag
accgagtacaagatccccgcgcggctcaccctgcagatctgggatgccgaccacttctca
gccgacgacttcctgggggccatcgagctggacctgaaccggttcccacggggcgcaaag
acagccaagcagtgcaccatggagatggccactggggaggtggacgtgcccctggtctcc
atcttcaagcagaagcgggtcaaaggctggtggccacttctggcccgcaatgagaatgac
gagtttgagctcacgggcaaagtagaggctgagctgcatttgctgacagcggaggaggct
gagaagaatccagtgggcctggcccgcaatgaacctgaccccctagagaaacccaaccgg
cccgacacggccttcgtctggttcctcaacccgctcaagtccatcaagtacctcatctgc
acgcggtacaagtggctcatcatcaaggtagtgctggcgctgctggggctgctcatgctg
gccctcttcctctacagcctccccggctacatggtcaagaagctgctaggggcatga
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