Sciurus carolinensis (gray squirrel): 124964894
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Entry
124964894 CDS
T08117
Name
(RefSeq) antiviral innate immune response receptor RIG-I-like
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04064
NF-kappa B signaling pathway
ncar04622
RIG-I-like receptor signaling pathway
ncar04623
Cytosolic DNA-sensing pathway
ncar05160
Hepatitis C
ncar05161
Hepatitis B
ncar05162
Measles
ncar05164
Influenza A
ncar05168
Herpes simplex virus 1 infection
ncar05169
Epstein-Barr virus infection
ncar05171
Coronavirus disease - COVID-19
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
124964894
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
124964894
04623 Cytosolic DNA-sensing pathway
124964894
09160 Human Diseases
09172 Infectious disease: viral
05161 Hepatitis B
124964894
05160 Hepatitis C
124964894
05171 Coronavirus disease - COVID-19
124964894
05164 Influenza A
124964894
05162 Measles
124964894
05168 Herpes simplex virus 1 infection
124964894
05169 Epstein-Barr virus infection
124964894
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ncar04054
]
124964894
Enzymes [BR:
ncar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124964894
Pattern recognition receptors [BR:
ncar04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
124964894
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
Helicase_C
Motif
Other DBs
NCBI-GeneID:
124964894
NCBI-ProteinID:
XP_047381587
LinkDB
All DBs
Position
14:39537120..39582281
Genome browser
AA seq
925 aa
AA seq
DB search
MTAEQRRNLLVFRDYVRKILDPTYILGYMAPWFREDKMQHIQAEKNNRGPMEAASLFLEF
LLELQEEGWFRGFLDALNQAGYSGLYEAIESWDFQKIEKLEVYRTLLRRLQPEFKARIIP
LEILPELSECLISQECEEIRQICFNRGMIAGAEKLVECLLRSDKENWPKTLKLALEKEQN
NLSEMWSVEKGEKDIETEDLENDGMETSEIHIFCQEDPEYQNLSQNFCAPSEVSQTNLYS
PLKPRNYQLELALPAKEGKNTIICAPTGCGKTLVSLLICEHHLNNFPQGRKGKVAFFANH
VPVYEQQKSVFLRHFERLGYSVAGISGATAGNVPVEQTIENNDIIILTPQILVNNLKNGT
IPSLSVFTLMIFDECHNTSKHHPYNMIMFNYLDQKLGGSSDPLPQVVGLTASVGVGDAKT
TNEAMSYICKLCAALDATVIATVRDNLEELEQVVYKPQKISRKVESRTTNKFKCIVSQLM
RDIECLARNICAEFGNLFQTQNGEFGTQKYEQRIVGVHKAGMVFRLPDKEKESRLCKALF
LYTSYLRKYNDALIISEDAQMKDALDYLKDFFNNVRTAGFDETEQDLTRRFEEKLEELES
VCRDPSNENPKLNDLYLILQEEYHLNPETRTILFVKTRALVDALKKWIEENSALSFLKPG
ILTGRGKTSQNTGMTLPAQKCVLDAFRTNGDNILIVTSVADEGIDIAQCNLVVLYEYVGN
VIRMIQTRGRGRARGSKCYLLTSNADVIEKENINMYKERMMNDSISRLQTWDEVEFEKTV
HSIQIHDKFIRDSQPKPKPVPDKENKKLLCGKCKTLACYTADVRVVEACHYTVVGDDFKE
RFVSKQHPNPKSYGGFEKKAKIFCAKQNCSHDWGIHVKYKEFEIPVIKIESFVVEDIATG
VQTRYSKWKDFHFEKIQFDATEIPK
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgacagccgagcagcggcgcaatctgctcgtcttccgagactatgtcaggaagattctg
gatcctacctacattctcggctacatggccccctggtttagggaggataagatgcagcat
attcaggctgagaaaaacaacaggggcccgatggaggctgcctcacttttcctagagttc
ctattggagctccaggaggaaggctggttccgtggctttttggatgccttaaaccaagca
ggttattctggactttacgaggccattgaaagttgggatttccaaaagattgaaaagtta
gaagtatacaggacacttttaagacgtttacaaccagaatttaaagccagaattattcct
ttagaaatccttcctgaactatctgaatgtttaattagtcaggaatgtgaagaaattaga
cagatttgtttcaacagggggatgatagcaggtgcagagaaactggtggaatgccttctc
agatcggacaaggagaactggcccaagactttgaaacttgctttggagaaagagcagaac
aacctcagtgaaatgtggtcggtagagaaaggtgaaaaagatattgaaactgaagatctt
gagaatgatggaatggaaacttctgaaatacacattttctgccaggaagatccagaatac
cagaatcttagtcagaatttctgtgcaccctcagaagtgtctcaaactaacttgtacagc
ccattgaaaccaagaaattaccaactagagcttgctttgcctgctaaggaaggaaaaaat
acaataatatgtgctcctactggttgtggaaaaaccttagtttcacttcttatttgtgaa
catcatcttaataattttccacaaggacgaaaagggaaagttgccttttttgctaatcat
gtccctgtgtatgaacagcagaagtctgtgttcttaagacattttgaaaggcttgggtac
agtgttgcaggcatttctggagcaacagccggaaatgtcccagtagaacagactattgag
aacaatgacatcatcattttaacacctcagattcttgtgaacaatctcaaaaatggaact
attccatctctgtctgtctttactttgatgatatttgatgaatgccacaataccagtaaa
caccacccatacaatatgatcatgttcaattatctagatcagaaacttgggggatcttca
gacccactgcctcaggttgttgggctgacagcctcagttggcgttggggatgccaaaacc
acaaatgaagccatgtcttacatctgcaaactgtgtgctgctctcgatgcaacagtgata
gcaacagtcagagacaacttggaggaactggagcaagttgtttataagccccagaaaatt
tccaggaaagtggaatcacggactactaacaaatttaaatgcatcgtatctcagctgatg
agggacatagaatgtctggcaaggaacatctgtgcagaatttggaaacttatttcaaact
caaaacggggaatttggaacacagaagtatgaacaacgcattgttggagttcataaagcc
ggcatggtgtttcgactgccagacaaagagaaagagagcagactctgcaaagcactgttt
ctgtatacttcatacttgcggaaatataatgatgccctcattatcagtgaggacgcacaa
atgaaagatgctctggattacttgaaagacttcttcaacaatgtccgaactgcaggattt
gatgagactgagcaagatcttactcggaggtttgaagaaaagctggaggaactagaaagt
gtctgccgagatcccagcaacgagaaccctaaactcaacgacctctacctcattttacaa
gaggagtaccacttaaatccagagaccagaaccattcttttcgtgaaaaccagagcactt
gtggatgctttaaagaaatggatcgaagaaaattctgcactcagctttctaaaacctggc
atattgactggtcgtggcaaaacaagtcagaatacaggcatgaccctcccagcacagaag
tgtgtactggatgcattcagaaccaatggagataatattctgattgtcacctcagttgct
gatgaaggcattgacattgctcagtgcaatctggtcgtcctgtatgagtatgtgggcaat
gtcatcagaatgatccaaaccagaggcagaggaagagcaagaggtagcaaatgttacctt
ctaactagtaatgctgatgtaattgaaaaagaaaatataaatatgtataaggaaagaatg
atgaatgactccatttcaagacttcagacatgggatgaagtggaatttgaaaaaacagtt
cacagtatacagatacatgataaattcatcagagatagtcaaccaaaaccaaaacctgtg
cctgataaggaaaataaaaagctgctctgtggaaagtgcaagaccttggcatgttacacg
gctgatgtacgagtggtagaggcatgccattacactgtggttggagatgattttaaggag
cgctttgtgagtaaacaacaccccaatccaaagagctatgggggttttgagaagaaagcg
aagatattctgtgccaaacagaactgcagccatgactggggaatccatgtgaagtataag
gaatttgagattccagtcataaaaattgaaagttttgtggtggaagatattgcaactgga
gttcagacacggtactcaaagtggaaagactttcattttgagaagatacagtttgatgct
acagaaatacccaaatga
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