Sciurus carolinensis (gray squirrel): 124964945
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Entry
124964945 CDS
T08117
Name
(RefSeq) guanine nucleotide exchange factor C9orf72 homolog isoform X1
KO
K23609
guanine nucleotide exchange protein C9orf72
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04140
Autophagy - animal
ncar05014
Amyotrophic lateral sclerosis
ncar05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124964945
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
124964945
05022 Pathways of neurodegeneration - multiple diseases
124964945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncar04131
]
124964945
Membrane trafficking [BR:
ncar04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
124964945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C9orf72-like
Motif
Other DBs
NCBI-GeneID:
124964945
NCBI-ProteinID:
XP_047381678
LinkDB
All DBs
Position
14:44046899..44072296
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AA seq
526 aa
AA seq
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MSTLCPPPSPAVAKTEIALSGESPLLAATFAYWDNILGPRVRHIWAPKTDQVLLSDGEIT
FLANHTLNGEILRNAESGAIDVKFFVLSEKGVIIVSLIFDGNWNGDRSTYGLSIILPQTE
LSFYLPLHRVCVDRLTHIIRKGRIWMHKERQENIQKIVLEGTERMEDQGQSIIPMLTGEV
IPVMELLSSMKSHSVPEEIDIADTVLNDDDIGDSCHEGFLLNAISSHLQTCGCSVVVGSS
AEKVNKIVRTLCLFLTPAERKCSRLCEAESSFKYESGLFVQGLLKDSTGSFVLPFRQVMY
APYPTTHIDVDVNTVKQMPPCHEHIYNQRRYMRSELTAFWRATSEEDMAQDTIIYTDESF
TPDLNIFQDVLHRDTLVKAFLDQNAEFECIKMEKIGNSKNSDCFQTSAATPVCWRASVEM
ALICILCQVFHLKPGLSLRSTFLAQFLLVLHRKALTLIKYIEDDTQKGKKPFKSLRNLKI
DLDLTAEGDLNIIMALAEKIKPGLHSFIFGRPFYTSVQERDVLMTF
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgtcgactctttgtccaccaccttctccagctgttgccaagaccgagattgctttaagt
ggtgaatcacctttactagcagctacctttgcttactgggacaacattcttggtcctaga
gtaaggcacatttgggccccaaagacagaccaggtacttctcagcgatggagaaataact
ttccttgccaaccacaccctaaatggagaaattcttcgaaatgcagagagtggggctata
gatgtaaagttttttgtcttatctgaaaaaggagtaattattgtttcattaatctttgat
ggaaactggaatggagatcgaagtacttatggactatcaattatacttccacagacagag
cttagtttctacctcccactccacagagtgtgtgttgatagattaacacatattattcgg
aaaggaaggatatggatgcataaggaaaggcaagaaaacatccagaagattgtcttagaa
ggcacagagagaatggaagatcagggtcaaagtattattccaatgcttactggggaagtc
attcctgtaatggaactgctttcatctatgaaatctcacagtgttcctgaagaaatagat
atagctgatacagtactcaatgatgatgatattggtgacagttgtcatgaaggctttctt
ctcaatgccatcagttcacacttgcaaacctgtggctgctctgtcgtagtaggcagcagt
gcagagaaagtaaataagatagtgagaacattatgcctttttctgactccagccgagaga
aaatgctccagattatgtgaagcagaatcatcatttaaatatgagtcaggtctctttgta
caaggcctgcttaaggattcaactggaagctttgtactgcccttccgacaagtcatgtat
gcgccatatcccaccacacatattgatgtggatgtcaacactgtgaagcagatgccaccc
tgtcatgaacacatttataatcagcgtagatacatgagatcggaactgacggcattctgg
agagctacttcagaagaagacatggcacaggataccatcatctacacagacgagagcttc
actcctgatttgaatattttccaggatgtcttacacagagacactctagtaaaagccttc
ctggatcagaatgcagaatttgagtgtatcaaaatggaaaaaataggaaattcaaaaaac
tcagattgctttcagaccagtgctgccactcctgtctgttggagggcatcagtggaaatg
gctctaatatgcattctctgccaggtctttcatttgaaacctggtttatctctcaggagt
actttccttgcacagtttctgcttgtccttcacagaaaagccttgacactaataaaatac
atagaagatgatacgcaaaaggggaaaaagccctttaaatctcttcggaacctgaagata
gaccttgatttaacagcagagggcgatcttaacataataatggctctagctgagaaaatt
aaaccaggcctacattcttttatctttggaagacctttctacactagtgtacaagaacga
gatgttctaatgactttttaa
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