KEGG   Sciurus carolinensis (gray squirrel): 124968885
Entry
124968885         CDS       T08117                                 
Name
(RefSeq) low-density lipoprotein receptor-like
  KO
K12473  low-density lipoprotein receptor
Organism
ncar  Sciurus carolinensis (gray squirrel)
Pathway
ncar03272  Virion - Hepatitis viruses
ncar04144  Endocytosis
ncar04913  Ovarian steroidogenesis
ncar04925  Aldosterone synthesis and secretion
ncar04927  Cortisol synthesis and secretion
ncar04934  Cushing syndrome
ncar04976  Bile secretion
ncar04979  Cholesterol metabolism
ncar05145  Toxoplasmosis
ncar05160  Hepatitis C
ncar05417  Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03272 Virion - Hepatitis viruses
    124968885
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    124968885
 09150 Organismal Systems
  09152 Endocrine system
   04913 Ovarian steroidogenesis
    124968885
   04925 Aldosterone synthesis and secretion
    124968885
   04927 Cortisol synthesis and secretion
    124968885
  09154 Digestive system
   04976 Bile secretion
    124968885
   04979 Cholesterol metabolism
    124968885
 09160 Human Diseases
  09172 Infectious disease: viral
   05160 Hepatitis C
    124968885
  09174 Infectious disease: parasitic
   05145 Toxoplasmosis
    124968885
  09166 Cardiovascular disease
   05417 Lipid and atherosclerosis
    124968885
  09167 Endocrine and metabolic disease
   04934 Cushing syndrome
    124968885
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ncar04131]
    124968885
Membrane trafficking [BR:ncar04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Low-density lipoprotein receptor (LDLR) family proteins
    124968885
SSDB
Motif
Pfam: Ldl_recept_a Ldl_recept_b FXa_inhibition cEGF EGF_CA SGL EGF EGF_3 hEGF Psg1 NBP1
Other DBs
NCBI-GeneID: 124968885
NCBI-ProteinID: XP_047387676
LinkDB
Position
17:14001768..14038719
AA seq 867 aa
MRTADWGLHWAVALLFAAAGATVEAKCGRNEFQCLDGNCISYKWVCDGSPECQDGSDESQ
ETCMSVTCKSGDFSCGGRINRCIPNFWRCDGQVDCENGSDEQSCPAKTCSQDEFRCHDGK
CISQHFVCDGDRDCLDGSDEGSCPVTTCGPASFRCNSSTCIPELWACDGDPDCEDGSDEW
PRRCGGRDTSSPQRDSGPCSSLEFHCPSSGECIHSSWRCDGGPDCKDKSDEENCTVATCR
PDEFQCSDGTCIHGSRQCDKEHDCKDMSDEVGCVNVTLCAGPDKFKCHSGECITLDKVCN
SARDCRDWSDEPIKECGTNECLDNNGGCSHICNDLKIGHECLCPDGFWLVDQRRCEDIDE
CQDPATCSQLCVNLEGSFKCECEEGFQMDPRTKACKAAGSIAYLFFTNRHEVRKMTLDRS
EYTSLIPNLKNVVALDTEVASNRIYWSDLSQRKIYSTKIDRAPSLSTYDTVIGSDLHAPD
GLAVDWIHSNIYWTDSVLGSVSVADTKGVKRRTLFQEKGSKPRAIVVDPVHGFMYWTDWG
TPAKIEKGGLNGVDVYSLVTEDIQWPNGITLDLSSGRLYWVDSKLHSISSVDVNGGNRKT
ILEDEKRLAHPFSLAVFEDKVFWTDVINEAIFSANRLTGSDVNLVAENLLSPEDIVLFHN
ATQPRGVNWCERTALRNGGCQYLCLPAPQINPHSPKFTCVCPDGMLLAKDMRGCLSEAEP
VVTTLGPSIVRSTVSSRVSSTARGPKHTDQRPASSTSWRPVAVPRLSTMESVTMSHQVLA
DVADRGKEEKPRGVGALSIVLPVALLVLLCFGAFLVWKNWRLKSINSINFDNPVYQKTTE
DQVHICRSQDGYTYPSRQMVSLEDDVA
NT seq 2604 nt   +upstreamnt  +downstreamnt
atgaggaccgcggactgggggctgcactgggctgtcgcactactcttcgctgcggcgggg
gctacagtggaagccaagtgtgggaggaatgagttccagtgcctggatgggaactgcatc
tcctacaagtgggtctgtgacggcagccctgagtgccaggacggctccgacgagtcccag
gaaacgtgcatgtctgtcacctgcaaatcaggggacttcagctgtgggggccggatcaac
cgctgcattcctaacttctggagatgcgatggccaagtggactgtgagaacggctcagac
gagcaaagctgccccgccaagacctgctcgcaggacgagtttcgttgccacgatgggaag
tgcatctctcagcattttgtctgtgacggggaccgcgactgcctggacggctcggatgag
ggctcctgcccagtgaccacatgcggccccgccagtttccgctgcaacagctccacctgc
atccctgagctgtgggcctgcgatggcgaccccgactgcgaggacggctccgacgagtgg
ccgcggcgctgcgggggccgggacacttccagcccccagcgggactctggcccctgctcc
tccctcgagttccactgtcccagcagtggcgagtgtatccacagcagctggcgttgtgac
ggtggccccgattgcaaggacaagtccgacgaggagaactgcactgtggctacctgccgt
cctgacgaattccagtgctcagatgggacctgcatccatggcagccggcagtgtgacaag
gagcatgactgtaaagacatgagtgatgaagtcggctgcgtcaacgtgacactgtgtgcg
gggcctgacaagttcaaatgccacagcggtgaatgcatcaccctggacaaagtgtgcaac
tcagcccgagactgccgggactggtcagacgagcccatcaaggagtgcgggaccaacgag
tgcttggacaacaatgggggctgttctcacatctgcaatgacctcaaaatcggccacgag
tgcttgtgtcccgatggcttctggctggtggaccagcgcagatgtgaagatatcgacgag
tgtcaggaccctgccacctgcagccagctctgcgtgaacctggagggcagcttcaagtgc
gagtgtgaggagggcttccagatggacccccgcaccaaggcctgcaaggcagcaggctcc
atcgcctacctcttcttcaccaatcgccacgaggtgaggaagatgacgctggaccgcagc
gagtacaccagcctcatcccgaacctcaagaacgtggtcgctctagacaccgaggtggcc
agcaacagaatctactggtctgacctgtcccagagaaagatctacagcaccaagatcgac
agagcccccagcttgtccacctatgacaccgtcatcggcagtgacctccatgctcccgac
gggctggccgtggactggatccacagcaacatctactggactgattccgtcctgggcagc
gtgtccgtggcggacactaagggcgtgaagaggagaacgctgttccaggagaaaggctcc
aagccgagggccatcgtggtggatcccgtccacggcttcatgtactggacagactggggc
acccccgccaagatcgagaaagggggcctgaatggcgtggatgtctactcgctggtgacg
gaagacatccagtggcctaatggcatcacactggatctctccagcggccgtctctactgg
gtagactccaagctgcactccatctccagcgttgatgtcaacgggggaaaccggaagacc
atcctggaggacgagaagcggctggcccaccccttctccttggccgtcttcgaggacaaa
gtattctggacagatgtcatcaacgaagccattttcagtgccaatcgcctcacaggctca
gacgttaatttggtggcggaaaacctgctgtcccccgaggacattgtcctgttccacaat
gccacacagccgagaggtgtgaactggtgtgagaggacagccctccgcaacggtggctgc
cagtacctgtgtctgccagccccgcagatcaacccccactcccccaagttcacctgtgtc
tgcccggacggtatgctgctggccaaggacatgaggggctgcctctcagaggcggagcct
gtagtgaccaccctggggccgtccatcgtcaggtccacggtcagttccagagtcagctct
acagcccgggggccgaagcacacagaccagcggcctgcttccagcacctcctggcggcct
gtggctgttccccggctcagcacaatggagtcagtgaccatgtcccaccaagtcctggcc
gacgttgctgaccgagggaaggaggagaagccccggggcgtgggggctctgtccatcgtc
ctccccgtcgcgctgcttgtcctcctctgcttcggggccttccttgtctggaagaactgg
cggctgaagagcatcaacagcatcaacttcgacaaccccgtgtaccagaagaccacggag
gaccaggtccacatctgccgcagccaggacggctacacctacccctcgagacagatggtc
agcctggaggatgacgtggcgtga

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