Sciurus carolinensis (gray squirrel): 124971022
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Entry
124971022 CDS
T08117
Name
(RefSeq) nuclear pore membrane glycoprotein 210-like
KO
K14314
nuclear pore complex protein Nup210
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03013
Nucleocytoplasmic transport
ncar05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124971022
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
124971022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124971022
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
124971022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_NUP210_2nd
Ig_NUP210_3rd
Ig_NUP210_7th
Ig_NUP210_4th
Ig_NUP210_1st
Ig_NUP210_15th
Ig_NUP210_9th
Ig_NUP210_6th
Big_2
NUP210_Ig
Motif
Other DBs
NCBI-GeneID:
124971022
NCBI-ProteinID:
XP_047390661
LinkDB
All DBs
Position
19:6193028..6293836
Genome browser
AA seq
1887 aa
AA seq
DB search
MAARGRRPPPLRALWLLLVLGPAAQAAKLNIPKVLLPFTRATRVNFTLEASEGCYRWSST
RPEVASIEPLGPGEQQCSQRAVVQARLTQPARLTSIIFAEDITTGQVLRCDAIVDLIHGI
QIVSTTRELYLEDSPLELKIQALDSEGNTFSTLAGLVFDWTIVKDTEADGFSDSHNALRI
LTFLESTYIPPSYISEMEKAAKQGDTILVSGMKTGSSKLKARIQEAVYRNVRPAEVRLLI
LENVLLNPAYSVYLLVGTSLRYKVQKIRQGKITELSMPSDQYKLQLQDCVPGPGGDPGRP
VAVLAQDTSRVTAVQLGQSSLVLDHRSIRMQGASRLPNSTVYVVEPGYLGFTVHPGDRWV
LETGRLYDVTIEVMDKSSNKVYLSDNLRIEAGFPPEFFEVLSSSQNGSYHRVRPTQRGQT
TINATLTSVVDQDGGVHLLPVPVWNQQEVDIHTPITLHPSILTFPWQPKTGAYQYTIKAH
GGSGNFSWSSSSYMVATVTVKGVMTTGSDTGLSVIQAHDVQNPLHFGEMKVYVIEPSSME
FAPCRVEARVGQTLELPLRINGLMPGGDSKAVTLSDCSHFDLAVEVENQGVFQPLPGWLP
PGSEHCSGVQVRAEAQGSTTLLVSYTHGHVHLSARITIAAYLPLRAVDPSSVAVVTLGSS
KEMWFEGGPRPWVLEPSKFFRNITSEDADSISLALLGPPASRNYQQHRILVTCRALGEQV
IALSVGNQPSLTNPFPAVEPAVVKFVCAPPSRFSLTPVYASPQLDLSCPLLQQSKQVVPV
SSHRNPLLDLAAYDQQGRRFDNFSSLSVQWESTRPALASIELDLPMQLVSRDDGGGQRKF
HGLQTVAVHEASGTTAISATVTGYQQSHLSAARVKPLCPASIELILVEDVSVSPEVATIY
NHPAVQAELHVRDGSGYFFLNTSSADVARVVYQEARGVATVHPLFPGSATVMIHDLCLAF
LAPAKAVVHVSDVHEVYVRVVDKVEIGKTVKAYVRVLDFYKKPFLAKYFAFMDLQLRAAS
QIITLVALDEALDGYTAAFLVHGVAIGQTSLTASVTAHAGQRISSAPQQIEVFPPFRLIP
RKVTLIIGAVMQVTSEGGPQPQSHILFSISNESVAAVSSAGLVRGLAVGNGTVSGVVQAA
DAETGKVVVVSQDLVEVEVLQLRAVRIRAPITRMRTGTQMPVYVTGITNSQSPFSFANAV
PGLSFHWSVTKRDILDLRGRHHEASIRLPAQYSFAMSVHGRARGRTGLRVVVKALDPAAG
QLYGHGRELSDEIQIQVFEKLRLLSPEIEAEQILMSPNSFIKLQTNRDGAAALCYRVLEG
PEKVPVVHADEKGFLVSGSAIGTSTVEVTAQEPFGANQTVVLAVKVAPIAYLRISMSPAL
HTQNQEALAALPLGMTATFTVHFHDSSGDVFHAHSLVLNFATNRDDLLQIAKGATNHTCV
VRTASAGLTLLSVRDAGHLGLSDYVPLPVLQAISPELPGAAVVGDVLCLATVLTGLEGAS
GTWSSSASSILHVDPKTGVAVARDAGPVTVYYEVPGHLRTFKEMVVSAPQRIVARRVQPV
QTSFQEATASNVAVTVGDGSSNLRGECSAAQREAIRTLRPESLIGCHLHFKQEAFKQEAF
DFPARDAFTAEPGFDATLGQYLCSVTMRQLTDKQLQHLNARKTPLVVTASLPGGRLSVEQ
VGAEVALSPGLYADQAEILLSNHFTSSEVKVFGATEILDSLEVKSGSPAVLAFVKEKSLG
LPSFVTYTVGVSDPMAGSQGPLSTALTFSSPASQQAITVPVTVAFVTDRRGPGPHGASLF
QHFLDSYQVMFFTLFTLLAGTAVMIIAYHTVCAPRELATPSVLTPRASPRHSPHYLGAST
PASSNALPPGRKASPPSGLWSPAYASH
NT seq
5664 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcggggccgcaggccgccgccgctgcgggcgctctggctgctgctggtgctg
ggccccgccgcccaggcggccaagctcaacatccccaaggtgctgctgcccttcacgcgg
gccacgcgcgtgaacttcacgctggaagcgtcggagggctgctaccgctggtcatccacc
cggccggaagtggccagcatcgagccgctgggccccggcgagcagcagtgttcccagcgg
gcagtggtgcaggcccgcctaacccagcccgcccgcctgaccagcatcatcttcgcggag
gacatcaccacgggccaggtgctgcgctgtgacgccatcgtggacctgatccacgggatc
cagatcgtctccaccacccgtgagctctacctcgaagactccccgctggagctgaagatc
caggctttggactcggaagggaacaccttcagcaccctggccggcctggtcttcgactgg
acgatcgtgaaggacacagaggcagatgggttctcagactcccacaatgcactgcggatc
ctcacgttcctggagtccacctacatccccccttcctacatctcggagatggagaaggcg
gccaagcagggggacaccatcctggtgtccgggatgaagaccgggagctccaagctgaag
gctcgcatccaggaggccgtctacaggaacgtgcgtcctgcggaggtcaggctgctgatc
ctggagaacgtgctcctgaacccggcgtacagcgtctacctgttggtgggcacctccctc
cgctacaaggtgcagaagatccggcagggcaagatcacagaactctccatgccttccgac
cagtacaagctgcagcttcaggactgcgtcccgggccccggaggagacccggggcggccc
gtggccgtcctggcgcaggacacgtcccgggtcaccgcagtgcagctgggacagagcagc
ctggtcctggaccaccggagcatccgtatgcagggcgcgtctcggttacccaacagcacc
gtctacgtggtcgaacccggatacctggggttcacagtccaccctggtgacaggtgggta
ctggagactggccgcctgtatgacgtcaccattgaagtgatggacaagtccagcaacaag
gtctacctgtctgacaacctccgcattgaagccgggtttccgcctgagtttttcgaggtt
ctctcgtcttcccagaacgggtcttaccaccgtgtcaggccgacacagcggggccagacc
accatcaacgcgaccctcacctctgtggtggaccaggacggaggggtccatctgctccca
gtgcccgtgtggaaccagcaggaggtggacattcatacccccatcactctccatcccagc
atcttgacgtttccatggcaaccgaagacgggcgcctatcagtacaccattaaggcccac
gggggcagcgggaacttcagctggtcctcctctagctatatggtcgccacggtgaccgtc
aagggagtgatgaccacgggcagcgacacgggactcagcgtgatccaggctcatgacgtc
cagaacccgctgcacttcggcgagatgaaggtgtacgtgatcgagcccagcagcatggag
ttcgccccatgccgggtggaggcgcgagtgggccagaccctggagctgcccctgaggatc
aacggcctcatgcccggcggggacagcaaggcggtcaccctgagcgactgctcgcacttc
gacttggcggtggaggtggagaaccagggcgtgttccagccccttccagggtggctgccc
ccaggctcggagcactgcagcggcgtccaggtgagagctgaggcccagggctccaccacg
ctcctggtgagctacacgcacggccacgtccacctgagcgccaggatcaccatcgctgcc
tacctgcccctcagggctgtggatccctcctcggtggccgtggtcaccctgggctcctcg
aaggagatgtggttcgaaggaggcccccgaccctgggtcctcgagccttccaagttcttc
cggaacatcacctccgaggacgcggacagtatcagtctggcgctcttggggccccctgcc
tcccggaattaccagcagcacaggatcctggtgacctgccgggccctgggcgagcaggtc
atcgcgctgtccgtggggaaccagcccagcctcaccaaccccttccctgccgtggagccc
gccgtggtgaagttcgtctgtgccccgccgtccaggttcagcctcacgcccgtctacgcc
agcccccagctggacctgtcctgtccgctgctgcagcagagcaagcaggtggtgccggtc
tccagccaccgcaacccgctactggacctggccgcctacgaccagcagggccgccgcttc
gacaacttcagctccctgagcgtccagtgggagtccacccggcccgcgctggccagcatc
gagctggacctgcccatgcagctggtgtcccgggatgatgggggtggccagaggaagttc
cacggtctgcagaccgttgccgtccacgaggcgtcggggaccacggccatctctgccacg
gtgaccggctatcagcagtcccacctcagcgcagccagagtgaagcccctgtgtcccgcc
tccatcgagctcatcctggtggaggacgtgagcgtgagtccagaagtggcgaccatctac
aaccaccctgccgtccaggcggaactccacgtcagggacggctccggctacttcttcctc
aacacgagcagcgcagacgtggcccgggtggtctaccaggaggccaggggcgtcgccacg
gtgcaccctttgttcccgggctcggccaccgtcatgatccacgacctgtgcctggccttc
ctggcccccgcgaaggctgtcgttcacgtctcggacgtccacgaggtctacgtccgcgtg
gtggacaaggtggagatcgggaagacggtcaaggcctacgtccgggtgctggacttttac
aagaagcctttcctggccaagtacttcgccttcatggacctccagctccgggcagcctcc
cagatcatcacgttggtggccctggatgaagccctggacggctacaccgctgcgttcctc
gtgcacggcgtggccattggccagaccagcctgaccgccagtgtgacggctcacgccgga
cagaggatcagctcggccccgcagcagattgaggtcttccctccgttccggttgataccc
aggaaggtgacgctcatcattggggcggtgatgcaggtcacctccgagggcggcccccag
ccgcagtcccacatcctcttctccatcagcaacgagagcgtggcggctgtgagcagcgcc
gggctggtgcgcggcctggccgtgggcaacggcaccgtgtccggcgtggtgcaggcggcg
gacgcggagaccggcaaggtcgtcgtggtctcccaggatctcgtggaggtggaggtgctg
cagctccgggcagtgaggatccgcgcgcccatcacacggatgaggacgggcacccagatg
cctgtctacgtcaccgggatcaccaacagccagagcccgttctcctttgcaaatgccgtg
ccgggcctgagcttccactggtctgtcaccaagagggacatcctggatctccggggacgg
caccacgaggcgtccatccgcctccccgcgcagtacagcttcgccatgagcgtgcacggc
cgggccaggggccgcaccgggctgagggtggtggtcaaggccctggaccccgcagcgggg
cagctgtatggccacggcagggagctctccgacgagatccagatccaggtcttcgagaag
ttgcggctgctgagccccgaaatagaagcagaacaaatactaatgtcacccaactcgttt
ataaagctgcagacaaacagggacggtgccgccgcgctttgctaccgcgtcctggagggg
cccgagaaggttcccgtcgtgcacgctgacgagaagggcttcctggtgtccggctccgcg
atcgggacctcgaccgtcgaagtgaccgcccaggagccttttggggccaaccagaccgtc
gtccttgctgtgaaggtggctcccatcgcttacctgaggatttccatgagccccgccctg
cacacccagaaccaggaggccctggcggccctgcctttggggatgaccgcgaccttcacc
gtccacttccacgacagctccggggacgtcttccacgcccacagtttggtcctcaacttc
gccactaacagagatgacctcctgcagatcgccaagggcgccaccaaccacacctgcgtg
gtccgcacggccagcgcgggcctgacgctgctcagcgtgcgggacgccgggcacctgggc
ctctccgactacgtgccgctgcccgtgctgcaggccatctctccagagctgcccggggcg
gcggtggtgggggacgtcctctgcctggccaccgtcctcaccggcctcgaaggcgcctcc
ggaacctggagctcctcagccagcagcatcctccacgtcgaccccaagaccggggtggcc
gtggcccgggacgcggggcccgtgacagtttactacgaggtccctgggcacctgaggacc
ttcaaggagatggtggtcagcgccccacagaggatcgtggcccgccgtgtccagccggtc
cagaccagcttccaggaggccacagcctccaatgtggccgtcactgtgggagacggaagc
tccaacctaagaggcgagtgctctgcggcccagagggaggccatccggacgctgcgcccc
gagtccctcatcggctgccatctgcacttcaagcaggaggccttcaagcaggaggccttc
gacttcccagcccgggacgcgttcacagcggagcccggcttcgacgccacgctgggccag
tacctctgctcagtcaccatgcgccagctgacggacaagcagctgcagcacttgaacgcc
aggaagacacccctggtggtcacggcctcgctgcccggcggccggctctctgtggagcag
gtgggggccgaggtggccctcagccccgggctgtacgccgaccaggccgagatcctcctg
agcaaccacttcaccagctccgaggtcaaggtcttcggggccacggagatcctggacagc
ctggaggtgaaatctgggtccccagcggtgctggccttcgtgaaggagaagtccctcggg
ctgcccagcttcgtcacgtacacggtgggcgtctcagaccccatggccggcagccagggg
cctctgtccactgcgctgaccttctccagccctgcctctcaacaagccataaccgtccca
gtcaccgtggccttcgtgacggaccgccgtgggcctggtcctcatggtgcgagcctcttc
cagcacttcctggactcctaccaggtcatgttcttcacgctcttcaccctgctggccggg
acggccgtcatgatcatagcctaccacacggtctgcgcgccccgagagctcgccacaccc
tccgtcctcacaccccgagccagccccaggcacagcccccactacttaggcgcctccacg
ccggcctcttccaacgcactgcctcctggtcgcaaggccagccctccctcgggactctgg
agcccagcctacgcctcccactag
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