Sciurus carolinensis (gray squirrel): 124971053
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Entry
124971053 CDS
T08117
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03018
RNA degradation
ncar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124971053
09123 Folding, sorting and degradation
03018 RNA degradation
124971053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124971053
03041 Spliceosome [BR:
ncar03041
]
124971053
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124971053
mRNA degradation factors
5'-3' decay
Lsm complex
124971053
Spliceosome [BR:
ncar03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
124971053
Complex C
U2 snRNP components
124971053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
TIG_SUH
vATP-synt_E
DUF150_C
Motif
Other DBs
NCBI-GeneID:
124971053
NCBI-ProteinID:
XP_047390718
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All DBs
Position
19:11580019..11588205
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AA seq
102 aa
AA seq
DB search
MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgacgtggaccaacaacagactaccaatactgtcgaggagcccctggatctc
atcaggctcagcctggatgagcgcatttacgtgaagatgagaaatgaccgggagcttcgc
ggcagattacacgcttatgatcaacacttgaacatgatcctgggcgatgtggaagaaact
gtgacgactatagaaatcgatgaagagacttacgaagagatatataaatcgaccaagcgg
aatattccgatgctcttcgtccggggagacggggtggtgctcgtggcccctccgctgaga
gtcggctga
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