Sciurus carolinensis (gray squirrel): 124976726 Help Entry 124976726         CDS       T08117                                  Name (RefSeq) thrombospondin-1 isoform X1   KO K16857   thrombospondin 1 Organism ncar  Sciurus carolinensis (gray squirrel) Pathway ncar04015   Rap1 signaling pathway ncar04115   p53 signaling pathway ncar04145   Phagosome ncar04148   Efferocytosis ncar04151   PI3K-Akt signaling pathway ncar04350   TGF-beta signaling pathway ncar04510   Focal adhesion ncar04512   ECM-receptor interaction ncar04820   Cytoskeleton in muscle cells ncar05144   Malaria ncar05165   Human papillomavirus infection ncar05205   Proteoglycans in cancer ncar05206   MicroRNAs in cancer ncar05219   Bladder cancer Brite KEGG Orthology (KO) [BR:ncar00001]  09130 Environmental Information Processing   09132 Signal transduction    04015 Rap1 signaling pathway     124976726    04350 TGF-beta signaling pathway     124976726    04151 PI3K-Akt signaling pathway     124976726   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     124976726  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     124976726    04148 Efferocytosis     124976726   09143 Cell growth and death    04115 p53 signaling pathway     124976726   09144 Cellular community - eukaryotes    04510 Focal adhesion     124976726   09142 Cell motility    04820 Cytoskeleton in muscle cells     124976726  09160 Human Diseases   09161 Cancer: overview    05206 MicroRNAs in cancer     124976726    05205 Proteoglycans in cancer     124976726   09162 Cancer: specific types    05219 Bladder cancer     124976726   09172 Infectious disease: viral    05165 Human papillomavirus infection     124976726   09174 Infectious disease: parasitic    05144 Malaria     124976726  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:ncar04131]     124976726   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:ncar00536]     124976726 Membrane trafficking [BR:ncar04131]  Endocytosis   Phagocytosis    Opsonins     124976726 Glycosaminoglycan binding proteins [BR:ncar00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    124976726 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C VWC2L_2nd EGF_3 cEGF Laminin_G_3 TSP1_ADAMTS Laminin_G_2 TSP1_CCN EGF Laminin_G_1 Motif Other DBs NCBI-GeneID:  124976726 NCBI-ProteinID:  XP_047395547 LinkDB All DBs Position 2:complement(112741619..112758135) Genome browser AA seq 1171 aa AA seqDB search MGLAWGFIVLFLLHVCDTNRIPESGGDNSVFDIFELTGAARRGSGRRLVKGPDPSSPAFR IENANLIPPVPDDKFQDLVDAVRADKGFLLLASLRQMKKTRGTLLAVERKDNSGQVFSVV SNGKAGTLDLSLSVQGNQQVVSVEEALLATGQWKSITLFVQEDRAQLYIDCEKMENAELD VPIQNIFTRDLANIARLRIAKGDVNDNFQGVLQNVRFVFGTTPEDILRNKGCSSAATNVL LTLDNNVVNGSSPAIRTNYIGHKTKDLQAICGISCDELSSMVLELRGLRTIVTTLQDSIR KVTEENKVLANELRRPPLCYHNGVQYRNNEEWTVDSCTECHCQNSVTICKKVSCPIMPCS NATVPDGECCPRCWPSDSADDGWSPWSEWTSCSATCGNGIQQRGRSCDSLNNRCEGSSVQ TRTCHIQECDKRFKQDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEAR ETKACRKDACPINGGWGPWSPWDICSVTCGGGVQKRSRLCNNPTPQFGGKDCIGDMTENQ VCNKQDCPIDGCLSNPCFAGAKCTSYPDGSWKCGACPPGYSGNGIQCKDVDECKEVPDAC FSHNGEHRCKNTDPGYNCLPCPPRFTGSQPFGRGIEHAMANKQVCKPRNPCTDGTHDCNK NAKCNYLGHYSDPMYRCECKPGYAGNGIICGEDTDLDGWPNEDLVCVANATYHCKKDNCP NLPNSGQEDYDKDGIGDACDDDDDNDKIPDDRDNCPFHYNPAQYDYDRDDVGDRCDNCPY NHNPDQADTDNNGEGDACAADIDGDGILNERDNCQYVYNVDQRDTDMDGVGDQCDNCPLE HNPDQLDSDSDRIGDTCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDACDHDDD NDGIPDDRDNCRLVPNPDQKDSDGDGRGDACKDDFDDDSVPDIDDICPENVDISETDFRR FQMIPLDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGYDEFNAVDFSGTFFINTERD DDYAGFVFGYQSSSRFYVVMWKQVTQSYWDTNPTRAQGYSGLSVKVVNSTTGPGEHLRNA LWHTGNTPGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKTGFIRVVMYEGKKIMADSGPIY DKTYAGGRLGLFVFSQEMVFFSDLKYECRDS NT seq 3516 nt NT seq  +upstreamnt  +downstreamnt atggggctggcctggggattcattgttctgttcctgttgcacgtgtgtgacaccaaccgt attccagagtctgggggagacaacagcgtttttgacatctttgaactcactggagctgcc cgcaggggttctgggcgccggctggtgaaggggcctgacccatccagcccagctttccgc attgagaatgccaacctgatcccccctgtgcctgatgacaagttccaagacctagtggat gctgtgcgggcagataaaggtttcctcctcctggcctccctgaggcagatgaagaagacc cggggcacactgctggccgtggagcgtaaagacaattctggccaggtcttcagtgtggtc tccaatggcaaggcaggcaccctggacctgagcctgagtgtgcaggggaatcagcaggta gtgtcggtggaagaagctctcctggccactggccagtggaagagcatcaccctgtttgtg caggaagacagggcccagctgtacatcgactgtgaaaagatggagaatgctgaactggat gtccccatccaaaacatatttaccagggacctggccaatatcgccaggctccgcattgca aagggagatgtcaatgacaattttcagggggtgctgcagaatgtgaggtttgtttttgga accacaccagaagacatcctcaggaacaaagggtgctccagtgcagctacaaatgtcctt ctcactcttgacaacaatgtggtgaatggttccagccctgccatccgcaccaactacatt ggccacaagacaaaggacctgcaagccatttgtggcatctcctgtgatgagctgtctagc atggtcctagaactcagaggcctgcgcaccatcgtgaccacactgcaggacagcatccgc aaagtgacggaagagaacaaagtgttggccaatgaactgaggaggcctccgctgtgctat cacaatggggttcaatataggaataatgaggaatggactgtggatagctgcactgagtgt cactgtcagaactcagtcaccatctgcaaaaaggtgtcctgtcccattatgccctgctca aatgccactgttcctgatggagaatgctgcccacggtgttggcccagtgactctgcagat gatggctggtccccttggtctgagtggacctcctgctctgcaacgtgtggcaatggaatt cagcagcgcggccgctcctgtgacagcctcaacaaccgatgcgagggctcctcagtgcag acacggacctgccacattcaggagtgtgacaagagatttaaacaggatggcggctggagc cactggtcaccatggtcatcttgttctgtgacatgtggtgatggtgtgatcacaaggatt cggctctgcaactctcccagcccccagatgaatgggaaaccatgtgaaggcgaagcccgg gagaccaaagcctgcaggaaagacgcctgccccatcaatggaggctggggtccctggtca ccttgggacatctgttctgtcacctgtggaggaggggtacaaaaacgtagccggctctgc aacaatcccacaccccagtttggaggcaaagactgcattggtgatatgacagaaaaccaa gtttgcaacaagcaggactgtccaattgatgggtgcctgtccaatccctgctttgctggt gccaagtgtaccagctatcctgatggcagctggaaatgtggtgcttgtcctcctggttac agtggaaatggcatccagtgcaaagatgttgatgagtgtaaagaagtgcctgatgcctgc ttcagccacaatggggagcacagatgtaagaacacagaccctggctacaactgcttgccc tgccctccacgcttcactggctcacagcccttcggacggggtatcgagcatgccatggcc aacaaacaggtatgcaagccccgaaacccctgcacagacgggacacatgactgcaacaag aatgccaaatgcaactacctgggccactacagtgaccccatgtaccgctgtgagtgcaaa cctggttatgctggcaatggcatcatctgcggggaggacacagacctggatggctggcca aacgaggacctggtgtgtgtggccaatgcaacttaccactgcaaaaaggacaactgtccc aaccttcccaactcagggcaggaagactatgacaaggatggaattggtgatgcctgtgat gatgatgatgacaatgacaaaattccagatgatagggacaactgtccattccattacaat cctgcccagtatgactatgacagagatgatgtgggagaccgctgtgacaactgcccctac aaccataacccagaccaggcagacacagacaacaacggggaaggagatgcctgcgctgca gacattgatggagatggtatcctcaacgaacgggacaactgccagtatgtctacaatgtc gaccagagggacactgatatggatggggttggagatcagtgtgacaactgccccctggaa cataatccagatcagctggactctgactctgaccgcattggggatacctgtgacaacaat caggacattgatgaagatggccaccagaacaacctggacaactgtccctatgtgcccaat gctaaccaggctgaccatgataaggatggcaagggagatgcttgtgaccatgatgacgac aatgatggcattcctgatgacagggacaattgcaggctggtgcccaatcctgaccagaag gactctgatggcgatggtcgaggtgatgcttgcaaagatgactttgacgatgacagtgtg cccgatattgatgacatctgtcctgagaatgttgacatcagtgagaccgatttccgccga ttccagatgattcctctagatcccaaagggacatcccaaaatgaccctaactgggttgtc cgccatcagggtaaagagctcgtgcagactgtcaactgtgatcctggacttgctgttggt tatgatgagtttaatgctgtggacttcagtggcaccttcttcatcaacaccgaaagggat gacgactacgctggatttgtgtttggttaccagtccagcagccgtttttatgttgttatg tggaagcaagtcacccagtcctactgggacaccaatcctacaagggctcagggatactca ggcctttcagtgaaagttgtgaactccaccacagggcctggtgagcacctgcgaaatgcc ctgtggcacacaggaaacacccctggtcaggtgcgcaccctgtggcatgaccctcgtcac ataggctggaaagatttcactgcctacagatggcgtctcagccacaggccaaagacaggt ttcattagagtggtgatgtatgaagggaagaaaatcatggctgactcaggacccatctat gacaaaacctatgctggtggtcggctaggattgtttgtcttctctcaagaaatggtgttc ttctctgacctgaaatatgaatgtagagattcctaa

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