Sciurus carolinensis (gray squirrel): 124977786
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Entry
124977786 CDS
T08117
Name
(RefSeq) lysosomal cobalamin transporter ABCD4 isoform X1
KO
K05678
ATP-binding cassette, subfamily D (ALD), member 4 [EC:
7.6.2.8
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar02010
ABC transporters
ncar04146
Peroxisome
ncar04977
Vitamin digestion and absorption
ncar04980
Cobalamin transport and metabolism
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
124977786
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
124977786
09150 Organismal Systems
09154 Digestive system
04977 Vitamin digestion and absorption
124977786
04980 Cobalamin transport and metabolism
124977786
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncar04131
]
124977786
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ncar02000
]
124977786
Enzymes [BR:
ncar01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.8 ABC-type vitamin B12 transporter
124977786
Membrane trafficking [BR:
ncar04131
]
Endosome - Lysosome transport
Others
Lysosomal membrane proteins
124977786
Transporters [BR:
ncar02000
]
ABC transporters, eukaryotic type
ABCD (ALD) subfamily
ABCD4 subgroup
124977786
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane_2
ABC_tran
AAA_16
AAA_30
AAA_22
DEAD
NACHT
IRK
AAA_29
AAA_23
nSTAND3
AAA_7
T2SSE
ATP-synt_ab
CoV_E
Motif
Other DBs
NCBI-GeneID:
124977786
NCBI-ProteinID:
XP_047397569
LinkDB
All DBs
Position
2:complement(172641281..172654320)
Genome browser
AA seq
606 aa
AA seq
DB search
MAVPGTAPGAGARPKLDLHFLHRFIRIQKVLFPSWSSQNVLMFLTLLCVTLMEQLVIYQV
GLIPSQYFGVLGNKDLDGFKALTFLAIVLIVLNSTLKSFDQFTCNLLYVSWRKDLTEHLH
HLYFQARVYYILNVLRDDIDNPDQRISQDVERFCRQLSSMASKLIISPFTLAYYTYQCFQ
STGWLGPVSIFGYFILGTLVNKSLMGPIVAKLVQQEKLEGDFRFKHMQIRVNAEPAAFYR
AGHVEHMRTDRRLQRLLQTQRELMSKELWLYIGINTFDYLGSILSYVVIAIPIFSGVYGD
LSPTELSTLVSKNAFVCMYLINCFTRLIDLSTTLSDVAGYTHRIGELQEALMEMSLKLQD
CEILDDSEWDLDKASGRPAPEPADTAFLLERVSISAPSSDIPLVKDLNLKICEGQSLLIT
GNTGTGKTSLLRVLGGLWASTRGSVQMLTDFGPHGVLFLPQKPFFTDGTLREQVIYPLKE
IYPDSGSADDERIVRFLELAGLSSLVARTEGLDQQVDWNWYDVLSPGEMQRLSFARLFYL
QPKYAVLDEATSALTEEVESDLYRIGQQLGMTFISVGHRPSLEKFHSWVLKLCGGGRWEL
SRVKVE
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcccggggacagcgcccggagctggcgccaggcccaagttagatctacacttt
ctccatcggttcataaggatacagaaggttttgtttccttcttggtcgtcacagaatgtc
ttgatgttcctgactcttttatgtgtgaccttaatggaacaattggtgatctaccaggtc
ggcttgatccccagccaatactttggggtcctgggaaacaaagacttggatgggtttaag
gcgttgacatttctggctattgtgctcatcgttctgaactccacactgaagagctttgac
cagttcacctgcaatctgctctatgtgagctggaggaaggacctcactgagcacctacac
cacctctacttccaggcccgcgtgtactacatcctcaacgtgctgcgggatgacatcgat
aacccggaccagcgcatcagccaggatgtggagcgattctgccggcagctcagcagcatg
gccagcaagctcatcatctcccccttcaccctcgcctactacacttaccagtgcttccaa
agcacagggtggcttgggcctgtgagcatcttcggatatttcatcctgggaaccttggtg
aacaaatctttgatggggcccattgtggccaagctggtgcagcaggagaagctggaaggg
gattttaggttcaagcacatgcagattcgggtgaatgctgagcctgctgctttctacaga
gcagggcatgtggagcacatgagaacagaccgcaggctgcagagactccttcagacccag
agggagctgatgtccaaggagctctggctgtacattggcatcaacacctttgactatctg
ggcagcatcctgagttatgttgtcatcgcaatccccattttcagtggggtctatggagac
ctgagccccacagagctgagcaccctggtcagcaagaatgcctttgtgtgcatgtacctc
atcaactgcttcacccgactcatcgacctctccaccacgctctcagacgtggccggttac
acgcacaggattggggagcttcaggaggccctgatggagatgtccctgaagttgcaggac
tgtgagatcctggacgatagtgagtgggacttggacaaggcctcaggacggccagcacca
gagccagcagacacagcttttctgcttgagcgggtctccatctctgccccctcctctgac
atacccctggtcaaggacctgaacctgaagatctgcgaggggcagagcctgctcatcacg
ggcaatacgggcacgggcaagacctccctgctgcgggttctgggcggcctctgggcaagc
acacggggctccgtgcagatgctgaccgactttgggccccatggggtgctgttcctgcca
caaaagccgttcttcactgatgggacccttcgggagcaggtgatatatcccctgaaggag
atctacccagactcaggctccgctgatgacgagaggatcgtgaggttcttggaattggca
ggcctgtccagcctggtggcaagaacagagggtctagaccagcaggtggattggaactgg
tatgatgtcctgtccccaggggagatgcaaaggctgtcctttgcccgactcttctaccta
cagcctaagtatgcagtgcttgatgaagccaccagcgccctgacagaggaggtggagagt
gacctctacagaattggtcagcagctggggatgacattcatcagcgtaggacatcggccc
agcctcgagaagtttcactcctgggttctgaaactatgtggaggaggaagatgggaactg
tctagagtcaaagtggaataa
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