Sciurus carolinensis (gray squirrel): 124979164
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Entry
124979164 CDS
T08117
Name
(RefSeq) breast cancer type 1 susceptibility protein homolog isoform X1
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar01524
Platinum drug resistance
ncar03440
Homologous recombination
ncar03460
Fanconi anemia pathway
ncar04120
Ubiquitin mediated proteolysis
ncar04151
PI3K-Akt signaling pathway
ncar05206
MicroRNAs in cancer
ncar05224
Breast cancer
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
124979164
09124 Replication and repair
03440 Homologous recombination
124979164
03460 Fanconi anemia pathway
124979164
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
124979164
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
124979164
09162 Cancer: specific types
05224 Breast cancer
124979164
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
124979164
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ncar01009
]
124979164
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ncar04121
]
124979164
03036 Chromosome and associated proteins [BR:
ncar03036
]
124979164
03400 DNA repair and recombination proteins [BR:
ncar03400
]
124979164
Enzymes [BR:
ncar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124979164
Protein phosphatases and associated proteins [BR:
ncar01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124979164
Ubiquitin system [BR:
ncar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
124979164
Multi subunit type E3
BRCC complex
124979164
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
124979164
DNA repair and recombination proteins [BR:
ncar03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
124979164
BRCA1-A complex
124979164
BRCA1-B complex
124979164
BRCA1-C complex
124979164
BRCA complex
124979164
FA (Fanconi anemia) pathway
Downstream FA components
124979164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT_assoc
BRCT
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4_3
zf-RING_2
zf-RING_5
BRCT_2
RING_XB3-XBAT31
zf-RING_6
zf-Nse
zf-ANAPC11
zf-RING_10
zf-rbx1
Baculo_IE-1
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
124979164
NCBI-ProteinID:
XP_047399506
LinkDB
All DBs
Position
3:19644687..19710353
Genome browser
AA seq
1849 aa
AA seq
DB search
MERKEMDLSAVRVEEVQNVLNAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQK
KGPSQCPLCKNDITKRSLQESTRFSQLVEELLKIIHAFELDTGLQFANSYNLPKKENNSP
EHLKEEISIIQSMGYRNRAKRLRESEPENPTLQETSLSVQLSNLGIMKSLRTKQQIQPQS
KSVYIELGSDSSEDTVNKANYCSVRDQELLQITTQGARAETHSVDSANKAACAFSEKDIA
NIEHHQSSNKDLNIIEKHATERHPEKYQGISVSNLHVEPCGTNTRASSLQHENSSLLLTK
DRMNVEKAEFCNKSKQPGFARSQQSRWAKSKETCNDRQTPSTEKKVDLNADPQYERKEPS
KQKPPCSENSRDSQDVPWITLNSSIRKVNEWFSRSDEMLTSDDPDDGSESNAEVTGVLEI
PNEVDGFSGSSEKIDLLATDPHNALMSKCERVCSKAVESNIEDKIFGKTYRRKASLPNLS
HITENLIIGAFATEPQITQERPLTNKLKRKRRTTSCLHPEDFIKKADLAVVQKTPEKMNQ
GTDQMKQNDQVMNITNSGQENETKVDYVQKEKNANPVESLEKESAFRTKAEPISSSISNM
ELELNIHNSKAPKKNRLRRKSSSRHIHVLEPVVNRNTSPPHHTELQIDSFTSSEEIKTRN
SNQMLVRHGRKLQLMEDAEPATEVRKSNKLNEQINKRHTNNAFPGLKLKGISGLFTNCSS
SSKVEEFVNPNLQEDETEENLKSNDTKDPKDMVLSGERVLQTERSAESTSISLVPDTDYG
TQDSISLLEANTFGKARTASNQHVTQYVAIENPKDGLFKDTRNDPVSLRCEVNHIQETNV
EMEESELDTQYLENTFQVSKRQSFALFSNQGNLEKECAVIYTPSKSLRKQSPEVIIECEQ
KEENWEKKKESKIRHVQALNATMGIKLDRDAQYNITEVSRMCPSFQFRGNETKLITADKH
GISQNPYHMPSISTIRSSVNSKCKKNLSEEKFEKHSRSPEKAVEYKRIIQSTVSTISQNN
IGQSAFKEANSDSINEAGSSTNEVGSSINEVGSSGENIQAELGRNRGPKLNAVLRLGLMQ
PEACKQNLLSNCKYPEIKRQGEDEVVQVVNTDFSPCLISDDLEQPMGDSHVTQVCSETPD
DLLDDDEIQENTSFVEGGIKERSAVFSKSIQRGEFSRSPSPLAHTSLAQSHQKGATKLES
SEESICSEDEELPCFQHLLFGKVTKTPQSTRHSTIVTDYLSRKTEENLVSLKNSLIDCNN
EVILEKASQEQHLSEEAKYSGSLFSSQCSAPEDLTANTNSQDPFLMFDPLSKQMKHQSEN
QEVVLSDNELISNDEERETGLEEDNQQEEQSVDSDLGEAASGYESETVLSEDCSGLSSQS
DILTTQQRDTMQDNLIKLQQEMAQLEAVLEQHGSQSSGNSPSLIADSCAPEDLPDPEQNP
SGEVLTSEKSNECSVRQHPKRLSPDKFQVSPDRSISENKELELKRSSPTSKSQVVDNRWS
AHSQNRNCSSQEELIKIVDVEEQELKKSEPNDLMEQSYLPRQDLEGTPYLESGISLFSNN
PESDSPEDKAPEAVHICSAPASTSALKLSQFQVGQSANSPAVAHTNSTAGCNAREESASR
EKPEFTSPTESANQRISMVVSGLTPKEFMLVHKFARKHHIILTNLITEETTHVVMKTDAE
FVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLDEHDFEVRGDVVNGRNHQGPKRARE
SQGRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSLTLGTDAQPIVVVQPDA
WTEDSGFHAIGQMCKAPVVTREWVLDSVALYQCQELDTYLIPQIPPSHC
NT seq
5550 nt
NT seq
+upstream
nt +downstream
nt
atggaacggaaagaaatggatttatcagcagttcgtgttgaagaagtacaaaatgtcctt
aatgctatgcagaaaatcttagaatgtccaatttgtctggaattgatcaaagaacctgtt
tccacaaagtgtgaccacatattttgcaaattttgtatgctgaaacttctcaaccagaag
aaagggccttcgcagtgtcctttgtgtaagaatgatataaccaaaagaagcctacaagaa
agtacaagatttagtcaacttgttgaagagctattgaaaatcattcatgcttttgaactt
gacacaggattgcagtttgccaacagttataaccttccaaaaaaggaaaataactctcct
gagcatttaaaggaggagatttctatcatccaaagtatgggctaccgaaatcgtgccaaa
agacttcgagaaagtgaacctgaaaatcctaccttgcaggaaaccagtcttagcgtccaa
ctctctaaccttggaatcatgaaatctctgaggacaaagcagcagatacaacctcaaagt
aaatctgtctacattgaattgggatctgattcttctgaagatacagttaataaggcaaat
tattgcagtgtgagagaccaagaattgttgcaaatcaccactcaaggagccagggctgaa
actcacagtgtggattctgcaaataaggctgcttgtgcgttttctgaaaaggacatagca
aatattgaacatcatcaatccagtaataaagatctgaacatcatcgagaagcatgcaact
gagaggcatccagaaaagtatcagggtatttctgtttcaaacttgcatgtggagccatgt
ggcacaaatactcgtgccagctcattacagcatgagaacagcagtttattactcactaaa
gacagaatgaatgtagaaaaggctgaattctgtaataaaagcaaacagcctggcttcgca
aggagccaacagagcagatgggctaaaagtaaggaaacctgtaatgataggcaaactcca
agcacagagaaaaaggtagatctgaatgccgatccccaatatgagagaaaagaaccaagt
aaacagaaacctccatgctctgagaattctagagatagccaagatgttccttggataaca
ctaaatagcagcattcggaaagttaatgagtggttttccagaagtgacgaaatgttaact
tctgatgacccagatgatggttctgaatcaaatgctgaagtaactggtgtattagaaatt
ccaaatgaagtagatggattttctggttcttcagagaaaatagacttgttggccactgat
ccacataatgctttaatgtctaaatgtgaaagagtctgctccaaagcagtcgagagtaat
attgaagataaaatatttgggaaaacctatcggaggaaggcaagcctccctaacttgagc
catataactgaaaatctaattataggagcatttgccacagaaccacaaataacacaagag
cgtcccctcacaaataaattaaagcgtaaaaggagaactacatcatgccttcatcctgag
gattttatcaagaaagcagatttggcagttgttcaaaagactcctgaaaagatgaatcag
ggaactgaccaaatgaaacagaatgatcaagtaatgaatattactaatagtggtcaagag
aatgaaacaaaagttgattatgttcagaaagagaaaaatgctaacccagtagaatcattg
gaaaaagagtctgctttcagaactaaagctgaacctataagcagcagtataagcaatatg
gaactagaattaaatatccacaattcaaaagcacctaagaaaaataggctgaggaggaaa
tcctctagtaggcacattcatgtgcttgaaccagtagttaatagaaatacaagtccacct
catcacactgaattacaaattgatagttttactagcagtgaagaaataaagacaagaaat
tccaaccaaatgctagtcaggcatggcagaaagcttcaactcatggaagatgcagaacct
gcaaccgaagtcaggaagagtaacaagctaaatgaacaaataaataagagacataccaat
aatgctttcccaggactgaagttaaaaggcatatctggtctttttactaactgctcaagt
tctagtaaagttgaagaatttgtcaatcctaaccttcaggaagacgaaacagaagagaac
ttgaaatctaatgataccaaagaccccaaagatatggtgttaagtggagaaagggttttg
caaactgaaagatctgcagagagtaccagtatttcattggtacctgatactgattatggc
actcaggacagtatctcattactggaagctaacacctttggaaaagcaagaacagcatca
aatcaacatgttactcagtatgtggcaatcgaaaaccccaaggatggtctttttaaagat
actagaaatgacccagtttcattgagatgtgaagttaaccacattcaggagacaaacgta
gaaatggaagaaagtgaacttgatactcagtatttagagaatacattccaagtttcaaag
cgtcagtcatttgctctgttttcaaatcaaggaaatctagaaaaggaatgtgcagtcatc
tataccccctctaagtccttacggaaacaaagcccagaagtgatcattgaatgtgaacaa
aaagaagaaaattgggaaaagaaaaaagagtctaaaattaggcatgtacaagcacttaat
gccactatgggcattaagctagatcgtgatgcccaatataatattactgaagtctctaga
atgtgtccttcatttcagttcagaggcaatgaaactaaactcattactgcagataagcat
ggaatttcacaaaacccatatcatatgccatcaatttctaccatcaggtcatctgttaac
tctaaatgtaagaaaaacctatcagaagaaaagtttgagaaacattcaaggtcacctgaa
aaagcagtggaatataagagaatcattcaaagtacagtaagcacaattagccaaaataac
attggacaaagtgcttttaaagaagcgaactcagacagtattaatgaagcaggctctagt
actaatgaagtaggctccagtattaatgaagtaggttccagtggtgaaaacattcaagca
gaactaggtagaaacagagggcccaaattaaatgctgtgcttagattaggtcttatgcaa
cctgaagcctgtaaacaaaatcttctaagtaattgtaaataccctgaaataaaaagacaa
ggagaagatgaagtcgttcaagttgttaatacagatttctctccatgtctcatttcagat
gacttagaacaacctatgggagatagtcatgtcactcaggtttgttctgagactcctgat
gacctgttagatgatgatgaaatacaggaaaataccagctttgttgaaggtggcattaag
gaaagatctgctgtttttagtaagagtatccagagaggagagtttagcaggagcccaagc
cctttagcccatacatctttggctcagagtcatcaaaaaggggccacgaaattagagtcc
tcagaagagagcatctgtagtgaggatgaagagcttccctgcttccaacacttactgttt
ggtaaagtaaccaaaacacctcagtctaccagacatagtactattgtgacagactatctg
tctaggaaaacagaggaaaacctggtatcattgaagaatagtttaattgactgcaataat
gaggtgatattggaaaaggcatcccaggaacaacaccttagtgaggaagcgaaatactct
ggtagcttgttttcttcccagtgcagtgcaccagaagacttgacagcaaatacaaattcc
caggacccctttttgatgtttgatcctctttccaaacaaatgaaacatcagtctgaaaac
caggaggttgtgctgagtgacaacgaattgatttcaaacgatgaagaaagggaaactggc
ctagaagaagataatcaacaagaagagcagagtgtggattcagacttaggtgaagcagca
tctgggtatgagagtgaaacagtcctttctgaagattgctcagggctgtcctcacagagt
gatattttaaccactcagcagagggataccatgcaagataacctgataaagctccagcag
gaaatggcccaactggaagcagtgctagaacagcatgggagccagtcttctggcaactcc
ccttccctcatagctgattcttgtgcccctgaggacctgccagatccggaacaaaaccct
tcaggtgaagtgttaacttcagagaaaagtaatgaatgttctgtaagacagcatccaaaa
aggctttctcctgacaagttccaggtatctccagatagatccattagtgaaaataaagaa
ttggaactaaaaaggtcttctcccacttctaaatcccaggtggtagataataggtggtct
gcacatagtcaaaacagaaactgctcctctcaagaggagctcattaagattgttgatgtg
gaggagcaagaactgaaaaagtctgagccaaatgatttgatggagcagtcttacttgcca
aggcaagatctagagggaaccccttacctggaatctggaatcagcctcttctctaataac
cctgaatctgattcccctgaagacaaagccccagaggcagttcatatttgcagtgcacca
gcttcaacgtctgcattgaaattatcccagtttcaagttggacagtctgctaacagtcca
gctgttgctcacactaatagtactgctgggtgtaatgcaagggaagaaagtgcaagcagg
gagaagccagaattcacatctccaacagaaagtgccaatcagagaatatccatggtggta
tcaggcttgacccccaaagaatttatgcttgtacacaagtttgccagaaaacaccatatc
attttaactaatctaattactgaagagactactcatgttgttatgaaaacagatgctgag
tttgtgtgtgaacggacactgaaatattttcttggaattgcaggaggaaaatgggtagtt
agctatttctgggtgacccagtctattaaagaaagaaagatgctagatgagcatgatttt
gaagtcagaggagatgtagtcaatggaagaaaccaccaaggtccaaagcgagcaagagaa
tcccaaggcagaaagatcttcaggggcctagaaatctgctgctatggaccttttactaac
atgcccacagatcaactggagtggatggtgcaattgtgtggggcttctgtggtgaaggaa
ctttcatcactcacccttggcacagatgctcagccaattgtggttgtgcagccagatgcc
tggacagaggacagtggctttcatgcgattgggcagatgtgtaaggcacctgtggtgacc
cgtgagtgggtgttggacagtgtagccctctaccagtgccaggagctggatacctacctg
ataccacagatcccacccagccactgctga
DBGET
integrated database retrieval system
