Sciurus carolinensis (gray squirrel): 124979948
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Entry
124979948 CDS
T08117
Name
(RefSeq) NACHT, LRR and PYD domains-containing protein 1-like isoform X1
KO
K12798
NACHT, LRR and PYD domains-containing protein 1
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
124979948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncar04131
]
124979948
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ncar04054
]
124979948
Membrane trafficking [BR:
ncar04131
]
Autophagy
Other autophagy associated proteins
TRIM-directed selective autophagy
124979948
Pattern recognition receptors [BR:
ncar04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
124979948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
FIIND
UPA-FIIND
NLRC4_HD2
CARD
PYRIN
NOD2_WH
LRR_6
AAA_16
LRR_4
NPHP3_N
NB-ARC
nSTAND3
AAA_30
AAA_14
AAA_22
Motif
Other DBs
NCBI-GeneID:
124979948
NCBI-ProteinID:
XP_047400856
LinkDB
All DBs
Position
3:complement(55325368..55375491)
Genome browser
AA seq
1411 aa
AA seq
DB search
MAGGTQDQLAHYLELLKKEELKEFQLRLSNTTFFGCSSGVTPAQAEKASGMEVSSQLVAQ
YGEQQAWDLALHTWKQMGLNLLCAQAMAERALISTHSPSVLSSPSIPTMESPSSPTSTEV
LKLWDYSGLGCTQESERRIFPDTLEYIQKGYPSLFLLQAPSSSTDHESPNQESPNPPTST
VLGGWEPPPQVNPEPSHQGAPETEWLLPETSGNCYTGIGERYQNQRKEKFCHTQSWKNDD
LHQKFTQLVLLQKPHPGGQDPLARKSWHHDVVEEQGHLIEISELFGPDPGIQEEPHTVIL
HGAAGIGKSTLARQVRGAWEEGQLYRDRFQHVFYFSCRELAQYKVVSLAELISEDLAAPA
APIGQILSQPEQLLFILDGVDEPKWVLENQSSELCVHWSQPQPMHALLGSLLGKAILPEA
SLLVTARTTDLKKLIPSLKQPRWVEVLGFSESGRKEYFYKYFTDESQANRALTLLKSNPE
LLTLCLVPLVSWLVCTCLKEQMKLGEALPPTFQTTTALCLHYLFQAFPAPHLGTQLRDFC
SLAAEGIWQRKTVFSAGDLRKHRLNGAIITIFLKMGVLHKHPNSLSYSFIHLCFQEFFAA
ISYALRDKEERSKSPDGLAGIAELLEAYGRHNLFGAPTMRFLFGLLSNQGSRAMENIFTC
RLSQKRKWELLWWAEAESPPGQLHSLEFLHCLYETQDEEFLMQVMASFQGTKMCVQTDME
LLVFTFCIKFCSHVKRLQLNESRQKRQAWRPPGIVLSRWTPITNNSWQVLFSTLGISGGL
KELDLSGNSLSHSAVQDLGKTLRQSSCNLETLRLASCGLTAESCKDLALGLSTSQTLTEL
ELNFNLITDAGAQHLFQELSQNHCKLQRLWLVSCGLTSSCCQDLAFVLSCSPSLTELDLQ
QNDLGDHGVRLLYKGLKHPTCQLTLLWLDYTLLSDQVREELRALEEETPRLLISSRWKPS
VMIPTGNLDGGEMGKSMSSLKRQRSQSEGGSPQVAQAESFHLSSCASLEDLHTESVGTEE
NFWGPTGPVAPEMVDKERSLYRVHFPVAGPYYWPNTGLSFVVRRAVTIEIDFCAWDQFLG
NTVPLHSWMVAGPLFDIKAERGAVAAVYLPHFVALQGGHVDISLFYVAHFKEEGMFLEKP
ARVEPHYAVLENPSFSPMGILLRMIPTALCFIPITSTTLLYHQLRPKEITSFHLYLIPSD
CSIQKAIDDEEKKFQFVRIHKPPPVTPLYLGSRYTVSASRKLEIIPKELELCYRSPGKPQ
LFSEFYVGHLGSGIKLQIKDKKGGTIVWKALLKPGDLRPAATLIPPVTKDASGSLHFVDQ
HREQLVARVTSVDPVLDKLHGQVLSEEQYEKVRAETTKPGQMRKLFSFSRSWDWSCKDKL
YRALKEIHPHLIVELWEKWGEDLGVSDRLSN
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atggctggaggaacccaggaccagctggcccattacttggagctactgaagaaggaggag
ctaaaggagttccagcttcgtctatccaacacaacattctttgggtgctcttctggggtg
acaccagctcaagcagagaaggcaagtggcatggaggtgtcctcgcaactggtggctcag
tatggggagcagcaagcctgggacctggccctccacacctggaaacagatgggcctgaat
ctgctgtgtgcccaggccatggcagagagagccttgatatcaacccactctccctcagtc
ctcagctctccaagtatacccaccatggagtcccccagctcgcccacctccacagaagtg
ctgaagctctgggattattctggcctggggtgcacccaggaatcagagagaagaattttt
cctgacacacttgaatacatccagaaaggatacccttccttgtttcttctccaagctcct
tcaagctccacagaccacgagtctccaaaccaagagtcacccaatcccccaacctccaca
gtgctggggggctgggaacctccacctcaggtcaacccagaaccaagccatcagggagct
cctgagactgagtggctactgcctgaaacatctggaaactgttacacaggaatcggagaa
agataccaaaaccagagaaaagaaaagttctgccacacacagtcctggaaaaatgatgat
ttgcaccaaaaattcacacagctggtacttctacaaaaacctcatcctggaggccaggat
cccctggccaggaaaagctggcatcatgatgtagtggaggaacaaggacatttgattgag
atcagcgaattatttggcccagacccaggtatccaggaggaacctcatactgttatactg
catggggctgctggaattggaaagtcaacactggccaggcaggtgagaggagcctgggag
gaaggccagctgtacagggaccgcttccagcatgtcttctacttcagctgcagagagctg
gcccagtacaaggtggtgagtctggctgagctcatctcagaagatttggcagcccctgca
gctcccattgggcagatcctgtctcagccagagcaattgctcttcatcttggatggtgtc
gatgaaccaaaatgggtcttggagaatcagagttctgagctctgtgtgcactggagccag
ccgcagcccatgcatgcactgctgggcagtttgctggggaaagccatactccctgaggcc
tccttgctggtcacagctcgaaccacagatctgaagaaactcattccttctttgaagcaa
ccacgttgggtagaagtcctgggcttctctgagtctggcaggaaagaatatttctacaaa
tatttcacagacgaaagccaagcaaacagagccttaactttgctgaaatcaaatcctgag
ctcttgaccttgtgtctcgtgcccttggtgtcttggctggtctgcacttgcctgaaggag
cagatgaagttgggggaagcactcccacccacctttcagaccaccacagccctctgtctg
cactaccttttccaggccttcccagctccacacctagggacacagctcagggacttctgc
tctctggctgctgaaggcatctggcaaagaaagacagtgttcagtgcaggtgacctcagg
aagcaccggttaaatggagccatcattaccattttcttgaagatgggtgttcttcacaag
caccccaactccctgagctacagctttattcatctctgtttccaggagttctttgcagca
atatcctatgccttgagggataaggaggaaagaagcaaaagtcctgatggccttgcaggt
atagcagaactgctagaagcatatggaaggcacaacctctttggggcaccaaccatgcgc
ttcctattcggcctcttaagcaatcaggggtcaagagcaatggagaacatcttcacttgc
aggctgtctcagaaaaggaaatgggagctgctgtggtgggccgaggctgaatccccacct
gggcagctacactctctggagtttctccactgtttgtatgagactcaggatgaggaattc
ctaatgcaggtgatggcctctttccaaggaacaaagatgtgtgtccagacagacatggag
cttctggtgttcactttctgcattaaattctgcagccacgtgaaaagacttcagctgaat
gagagcagacagaagagacaagcatggaggcctcctggaattgttctgtccaggtggacc
ccaatcaccaacaacagttggcaggttctcttctccacacttgggatcagtggaggcctg
aaggagctggacctaagtggaaattcgctaagtcactctgcagtgcaggatcttggtaag
accttgagacaatcttcttgcaacctggagaccttacggttggccagctgtggcctcact
gctgagagctgcaaggaccttgccttggggctgagcaccagccagaccctgactgagctg
gagctgaacttcaacttgataacagacgctggagcccagcaccttttccaggagctgagt
cagaatcattgcaagctacagcgactgtggctggtcagctgtggtctcacttccagctgc
tgccaggacctggcctttgtgctcagctgcagccccagcctgacggagctagacctgcag
cagaatgatctgggcgaccatggtgtgaggctgctgtacaaggggctcaagcatcccacc
tgccaactcacactcctgtggttggactatacccttttgagtgaccaagtgagggaagag
ctgagggccctggaagaagagacacccaggttgctcatctccagcagatggaagccaagt
gtgatgatccctactgggaacctggatggaggagagatgggtaagagcatgtcctcactc
aagcggcagagatcacaatcagagggaggctccccacaagtagcacaagcggaatccttc
catctgtcttcttgtgcctctttggaggacttgcacacagagtctgtgggaactgaagaa
aacttctggggccccacagggcctgtggctcctgagatggtggacaaagagaggagcctg
taccgagttcacttccctgtggctggtccctactactggcccaacacgggtctcagcttt
gtggtgagaagggcagtgaccatcgagattgacttctgtgcctgggaccagttcctaggc
aacactgtcccactgcacagctggatggtggcagggcctctgtttgacatcaaagctgag
cggggagctgtggccgctgtgtacctacctcactttgtggccctccaaggggggcatgtg
gacatctccctgttctatgtggcccactttaaagaggaggggatgttcctggagaagcca
gccagggtggagccacactacgcagtcctggaaaaccccagcttctccccgatgggaatc
ctcctgagaatgatccccaccgccctgtgcttcatccccatcacctccaccacactgctg
taccatcaactccgtcccaaggaaatcacctccttccacctctacctgatccctagtgat
tgctccattcagaaggccatagatgatgaagaaaagaagttccagtttgtccgaatacac
aagccacctccagtgacacccctttacctgggatcccgctatactgtgtctgcttcaagg
aagctggaaatcattcctaaggaattggagctctgctatcggagccctggaaaacctcag
ctcttctctgagttctacgttggccacttgggatcagggatcaagttgcaaataaaagac
aagaaaggtggaactatagtatggaaggccctactaaaaccaggtgacctcagacctgca
gctactctgatccctccagtcaccaaagatgcctcaggctcactgcacttcgtggatcag
catcgggagcagctggtggcccgagtgacatcagtggaccctgtcttggacaagctgcat
ggacaggtgctgagcgaagaacagtatgagaaggtacgggctgagactaccaagccaggt
cagatgcgcaagctcttcagcttcagccggtcctgggactggtcctgcaaagacaagctc
taccgagccttgaaggagatccatcctcacctgattgtggaactctgggagaagtgggga
gaagacttaggagtctctgacaggctcagcaactga
DBGET
integrated database retrieval system
