KEGG   Sciurus carolinensis (gray squirrel): 124982341
Entry
124982341         CDS       T08117                                 
Name
(RefSeq) apoptotic protease-activating factor 1 isoform X1
  KO
K02084  apoptotic protease-activating factor
Organism
ncar  Sciurus carolinensis (gray squirrel)
Pathway
ncar01524  Platinum drug resistance
ncar04115  p53 signaling pathway
ncar04210  Apoptosis
ncar04215  Apoptosis - multiple species
ncar05010  Alzheimer disease
ncar05012  Parkinson disease
ncar05014  Amyotrophic lateral sclerosis
ncar05016  Huntington disease
ncar05020  Prion disease
ncar05022  Pathways of neurodegeneration - multiple diseases
ncar05134  Legionellosis
ncar05152  Tuberculosis
ncar05160  Hepatitis C
ncar05161  Hepatitis B
ncar05162  Measles
ncar05164  Influenza A
ncar05168  Herpes simplex virus 1 infection
ncar05169  Epstein-Barr virus infection
ncar05200  Pathways in cancer
ncar05222  Small cell lung cancer
ncar05417  Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    124982341
   04215 Apoptosis - multiple species
    124982341
   04115 p53 signaling pathway
    124982341
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    124982341
  09162 Cancer: specific types
   05222 Small cell lung cancer
    124982341
  09172 Infectious disease: viral
   05161 Hepatitis B
    124982341
   05160 Hepatitis C
    124982341
   05164 Influenza A
    124982341
   05162 Measles
    124982341
   05168 Herpes simplex virus 1 infection
    124982341
   05169 Epstein-Barr virus infection
    124982341
  09171 Infectious disease: bacterial
   05134 Legionellosis
    124982341
   05152 Tuberculosis
    124982341
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    124982341
   05012 Parkinson disease
    124982341
   05014 Amyotrophic lateral sclerosis
    124982341
   05016 Huntington disease
    124982341
   05020 Prion disease
    124982341
   05022 Pathways of neurodegeneration - multiple diseases
    124982341
  09166 Cardiovascular disease
   05417 Lipid and atherosclerosis
    124982341
  09176 Drug resistance: antineoplastic
   01524 Platinum drug resistance
    124982341
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_IFT122_1st Beta-prop_THOC3 WD40 WD40_WDHD1_1st WD40_Prp19 APAF1_C WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR3_2nd WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd EIF3I WD40_Gbeta NB-ARC Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd WHD_APAF1 ANAPC4_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR75_1st WDR90_beta-prop_4th CARD Beta-prop_NOL10_N NBCH_WD40 Beta-prop_EIPR1 Beta-prop_WDR41 CFAP251_N Beta-prop_TEP1_C Beta-prop_RIG_2nd ASA1 Beta-prop_Vps41 Beta-prop_Aladin Beta-prop_VPS8 Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st DSE1_N Beta-prop_SCAP RMC1_N Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214 Beta-prop_HPS5 WD40_RFWD3 WD40_like TRM82_WD Beta-prop_SPT8 Beta-prop_WDR11_2nd CARD_2 Beta-prop_Nup120_160 Beta-prop_ACSF4 Ge1_WD40 PAC11 Beta-prop_DCAF4 PEP5_VPS11_N Utp8_b_propeller AAA_16 Hira Beta-prop_DCAF12 AAA_22 Beta-prop_RSE1_2nd NPHP3_N DUF2677 AAA_18 NACHT nSTAND6 ATPase_2
Other DBs
NCBI-GeneID: 124982341
NCBI-ProteinID: XP_047404745
LinkDB
Position
4:154842959..154933241
AA seq 1249 aa
MDAKARNCLLQHREALEKDIKTSYIMDHMISDGVLTVSEEEKVKNQPTKHQRAAMLIKLI
LKKDNYSYISFYNALLHEGYKDLAALLHSGIPEISSSSGKDSDGGITSYVRTVLCEGGVP
QRPVVFVTRKKLVNAIQQKLFKLNGDPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFPG
GVHWVSVGKQDKSGLLMKLQNLCSRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL
ILDDIWDSWVLKAFDNQCQILLTTRDKSVTDSVMGPKYEVSVESGLGKEKGLEILSLFVN
MKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLRQLQNKQFKRIRKSSSYD
YEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVN
KSLLICDRNGKSFRYYLHDLQIDFLTEKNRSQLQDLHKKMITQFQRYYQLHTLSPDQEDC
MYWYNFLAYHMASANMHKELCALMFSLDWIKAKTELVGPAHLIHEFVEYRHILDEKDCAV
CENFQEFLSLNGHLLGRQPFPNIVQLGLCEPETSEVYQQAKLRAKQEVDNGMLYLEWINK
KTIKNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEV
LCCAFSTDDKFIATCSVDKKVKIWNSVTGELVHTYDEHAEQVNCCHFTNKSHPPLLATGS
SDFFLKLWDLNQKECRNTMFGHTNSVSHCRFSPDDELLASCSADGTLKLWDVRSANERKS
INVKQFFLNSEDPQEEIEVIVKCCSWSTDGARIMVAAKNKIFLFDIYTSGLLAEIHTGHH
STIQYCDFSPQNHLALVALSQYCVELWNIDLCVKVADCRGHLSWVHGAMFSPDGSSFLTS
SDDQTIRVWETKKVCKSSAIVLKQDVDVVFQENEVMVLAVDNIKHLLLINGKTGQVDYLT
EAQVSCCCLSPHLQYVAFGDEDGAIQILELLNNRVFQSRIGHKKAVRHIQFTADGKTLIS
SSDDSSIQIWNWQSEEYVFLQAHQEAVKDFRLLKNSRLLSWSFDGTVKVWNIITGRMEKD
FVCHQGTVLSCDVSSDATKFSSTSADKTAKIWNFELPSPLHELKGHNGCVRCSAFSVDSS
LLATGDDNGEIRIWNVSNGELLHSCAPISVEEGAATHGGWVTDLYFSPDSKMLVSAGGHL
KWWNVETGESLQTFYTNGTNLKKIHVSPDFKTYVTVDNLGILYILQILE
NT seq 3750 nt   +upstreamnt  +downstreamnt
atggatgcaaaagctcgaaattgtctacttcaacatagagaagctctggaaaaggacatt
aaaacatcctacatcatggatcacatgattagtgatggagttttaacagtgtcagaagag
gaaaaagtaaagaatcagcccactaaacatcagcgagcagctatgctaattaaattgata
cttaaaaaagacaattattcctacatatcattctacaacgctttactacacgaaggatat
aaagatctggctgcccttcttcacagtggcattcctgagatttcatcttccagtggcaaa
gattcagatggtggaataacttcctatgtaaggacagtgctgtgtgaaggtggagtacca
caaagaccagttgtttttgttactaggaagaagctggtgaatgcaattcaacagaaactc
ttcaaactgaatggcgacccaggatgggtcaccatatatggaatggcaggctgtgggaag
tctgtattagctgcagaagctgttcgagatcattcactcctagaaggttgtttcccaggg
ggtgtgcattgggtttcagttggaaaacaagacaaatctggacttctgatgaaactgcag
aatctctgctcgcggttggatcaggatgagagtttctcccagaggcttcctcttaacatt
gaagaggctaaagaccgtctccgcattctaatgctgcgcaaacacccaaggtctctattg
atcttggatgacatttgggattcttgggtgttaaaagcatttgacaatcagtgtcagatt
cttcttacaaccagagacaagagtgttacagattcagtaatgggtcctaaatatgaagtc
tccgtggagagtggccttggaaaagaaaaaggacttgaaattttatccctttttgttaat
atgaaaaaagcagatttgccagaacaagctcatagtattataaaagaatgcaaaggttct
cctcttgtggtgtctttaattggtgcacttttacgtgattttcctaaccgctgggagtac
tacctcaggcaactgcagaacaagcagtttaagagaataaggaaatcttcatcttatgat
tatgaggctctggatgaagccatgtctataagtgttgaaatgctcagagaagacattaaa
gattattacacagatctttctatccttcagaaggatgttaaggtgcctacaaaggtgtta
tgtattctctgggacatggaaactgaagaagttgaagacatactgcaggagtttgttaat
aagtctctcttaatctgtgatcggaatggaaagtcatttcgttattatttacatgatctt
caaatagattttcttacagagaagaatcgcagccaacttcaggatctacataagaagatg
atcactcagtttcagaggtattaccagctgcatactctttccccagatcaggaggactgc
atgtattggtacaactttctggcttatcacatggctagtgccaatatgcacaaagaactt
tgtgctttaatgttttccctggattggattaaggccaaaacagaacttgtaggccctgct
catctgattcatgaatttgtggaatataggcatatattggatgaaaaggattgtgcagtc
tgtgagaattttcaggagtttttatcattaaatggacaccttcttggacgacagccattt
cctaatattgtacaactgggtctctgtgaaccagaaacttcagaagtttatcagcaagca
aagctgcgggccaagcaggaggtcgataacgggatgctttacctggagtggataaacaaa
aaaaccatcaagaatctctcccgcttagttgtccgcccccatacagatgctgtttaccac
gcgtgcttttctgaggatggccagagaatagcttcttgtggagctgataaaaccttacag
gtgttcaaagctgaaacaggagagaaacttttagaaatcaaagctcatgaggatgaagta
ctttgttgtgcattctctacggatgacaaatttatagcaacctgctcagtggataaaaaa
gtaaagatttggaattctgtgactggggaactagtccacacctatgatgagcacgcagag
caagtcaattgttgccatttcaccaacaagagtcatccccctctcttagccactgggtca
agtgattttttcctcaaactttgggatttgaatcaaaaagaatgtcgaaataccatgttt
ggccatacaaattcagtcagtcactgtagattttcaccagatgatgagcttttggccagt
tgttcagctgatggaacattaaagctttgggatgtgagatcagcaaacgagaggaaaagc
attaatgtgaagcagttcttcctaaattcagaggaccctcaagaggagatagaagtgata
gtgaaatgttgttcctggtcgactgatggtgctagaataatggtggcagcaaaaaataaa
atttttctttttgatatttataccagtggcctgttggcagaaatccacacaggccatcat
agcaccatccagtactgtgacttctcccctcagaaccatttggcactggtggctttgtcc
caatactgtgtggagttatggaatatagacttatgtgtaaaggtagctgattgcagagga
catctaagttgggttcatggtgcgatgttttctcctgatggatcatcatttttgacgtct
tcagatgaccaaacaatcagggtttgggagacaaagaaggtatgtaagagctctgctatc
gtgttaaagcaagatgtagatgttgtatttcaagaaaatgaagtgatggtccttgcagta
gacaatataaaacatctgctactcattaatggaaaaacaggtcaagttgattacctgact
gaagctcaagttagctgctgttgcctaagcccacatctgcagtatgtggcatttggagat
gaagatggagccatccagattttagaacttctaaacaacagagttttccaatccagaatt
ggtcacaagaaagctgtaaggcacatccagttcacagctgatgggaagactcttatttca
agttctgatgattcttcaattcagatatggaattggcaatcagaggaatatgtttttctg
caagcccatcaggaagcagtgaaagacttcaggcttctaaaaaattcacgattgctttct
tggtcatttgatggaacagtgaaggtatggaatattattactggaagaatggaaaaagac
tttgtctgtcaccagggtacagtactttcttgtgatgtttcttctgacgctaccaagttt
tcatctacctctgctgataagactgcaaagatttggaactttgaactcccttcccctctt
catgagttgaaaggccacaatggctgtgtccgctgctccgccttctctgtggacagttcc
ctgctggcaactggagatgacaatggagaaatcaggatatggaacgtctcaaatggcgag
cttcttcactcctgtgctccgatttcagtagaagaaggagctgctacccatggaggctgg
gtgaccgacctttacttttctccagacagcaaaatgcttgtctctgctggaggacatctt
aagtggtggaatgtggagacaggggagtccttgcagaccttctacacaaatggaaccaat
cttaagaaaatacacgtgtccccagacttcaaaacatatgtgactgttgacaatcttggt
attttatatattttacagattttagagtaa

DBGET integrated database retrieval system