KEGG   Sciurus carolinensis (gray squirrel): 124983047
Entry
124983047         CDS       T08117                                 
Name
(RefSeq) T-cell surface glycoprotein CD4-like isoform X1
  KO
K06454  T-cell surface glycoprotein CD4
Organism
ncar  Sciurus carolinensis (gray squirrel)
Pathway
ncar03250  Viral life cycle - HIV-1
ncar03260  Virion - Human immunodeficiency virus
ncar04060  Cytokine-cytokine receptor interaction
ncar04514  Cell adhesion molecule (CAM) interaction
ncar04612  Antigen processing and presentation
ncar04640  Hematopoietic cell lineage
ncar04658  Th1 and Th2 cell differentiation
ncar04659  Th17 cell differentiation
ncar04660  T cell receptor signaling pathway
ncar05135  Yersinia infection
ncar05166  Human T-cell leukemia virus 1 infection
ncar05170  Human immunodeficiency virus 1 infection
ncar05235  PD-L1 expression and PD-1 checkpoint pathway in cancer
ncar05340  Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    124983047
   03260 Virion - Human immunodeficiency virus
    124983047
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04060 Cytokine-cytokine receptor interaction
    124983047
   04514 Cell adhesion molecule (CAM) interaction
    124983047
 09150 Organismal Systems
  09151 Immune system
   04640 Hematopoietic cell lineage
    124983047
   04612 Antigen processing and presentation
    124983047
   04660 T cell receptor signaling pathway
    124983047
   04658 Th1 and Th2 cell differentiation
    124983047
   04659 Th17 cell differentiation
    124983047
 09160 Human Diseases
  09161 Cancer: overview
   05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
    124983047
  09172 Infectious disease: viral
   05166 Human T-cell leukemia virus 1 infection
    124983047
   05170 Human immunodeficiency virus 1 infection
    124983047
  09171 Infectious disease: bacterial
   05135 Yersinia infection
    124983047
  09163 Immune disease
   05340 Primary immunodeficiency
    124983047
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:ncar04090]
    124983047
CD molecules [BR:ncar04090]
 Proteins
  124983047
SSDB
Motif
Pfam: CD4-extracel C2-set ig Ig_3 V-set Ig_2 I-set Tcell_CD4_C LRRNT_2 Receptor_2B4
Other DBs
NCBI-GeneID: 124983047
NCBI-ProteinID: XP_047405897
LinkDB
Position
4:72386946..72420164
AA seq 471 aa
MIQAPAYLSKAKMNQRIAFWQLLLVLQLTLLPAVTQGKEIVMGQVEGSVELPCTASQKKT
MLFTWKYSNQTKILGNQNNFLTKGFSLLNDRTDSKKSQWDQGSFPLIISKLRMEDSTTYI
CEVENKKTEVELQVFRLTANPGTCLLQGQSLNLTLEFPPGSKPSVKFKNPGNKISTGGKA
LSVPNVGFQDSGTWTCIISQDQKMLEIKINILVLGFQKTLNTVYKKVGEQVEFSFPLNVG
DENLNGELRWQAERSSSSKTWVTFSLKNKQVSVQTVTQDPVLQMAENLPLRLILPQVLPQ
YAGSGNLTLTLDQGKLHQKVNLVVMNVTFHQNDLICEVLGPIPPKLMLRLKPENQEAKVS
KPEKKIRVPNPKAGVWQCLLNDGDKVLLDFQVDVSPTGLNPHQSMFLAAVIGSTLSFMLL
TGLCIFCCVKCRHRRLSPLPPPRGTYLLEAWDPHDSPPCSWTAPGRADVSD
NT seq 1416 nt   +upstreamnt  +downstreamnt
atgattcaggcccctgcctacctcagcaaggctaaaatgaaccaaagaatcgctttttgg
caactgctgctagtactgcaactgacactgctcccagcggtcactcagggaaaggaaata
gtgatgggccaagtggaaggttcagtggaactgccctgcacagcttcccagaagaagacc
atgttgtttacctggaaatattctaaccagaccaagattctgggaaatcagaacaacttc
ttgaccaaaggtttctcccttctgaatgatcgaactgactcaaaaaaatcccagtgggat
caaggatcctttccccttatcatctctaaacttaggatggaagattcaacgacctacatc
tgtgaagtggaaaataagaagacagaggttgaattgcaggtgttcagactaactgccaac
ccaggtacctgcctgctgcaggggcaaagcctgaacctgaccttggaattcccccctggt
agtaaaccctcagtgaaattcaagaacccagggaacaaaattagcactgggggcaaggct
ctttcagtgcccaatgtgggattccaggacagtggcacctggacatgcatcatctcccag
gaccagaagatgctggagatcaaaataaatatcttggttttgggtttccagaagaccctc
aacacagtctataagaaagtgggggagcaggtggagttctcttttccactgaatgttgga
gatgagaacctgaacggcgagctgaggtggcaggcagagaggtcttcttcctccaagacc
tgggtcaccttctctttgaagaataagcaggtgtctgtgcaaacggttacccaggaccca
gtgctccagatggctgagaaccttccactgcgcctcatcctgccccaggtcttgcctcag
tatgctggctctggaaacctgactctgactcttgatcaaggaaagctgcatcagaaagtg
aacctggtggtgatgaatgtgacttttcaccagaatgacttgatctgtgaggtgctggga
cccatccctcccaagctgatgctgcgtttgaagccagagaatcaggaggctaaggtctca
aagccggagaagaagattcgggtaccaaaccccaaggcaggggtgtggcagtgcctactg
aatgatggggacaaggtcttactggatttccaggttgatgtttcacccacagggttgaac
ccacatcagtcaatgttcctggctgctgtgattgggagcaccttaagcttcatgctcctc
actgggctctgcatcttctgctgtgtcaagtgccgacaccgaaggctttccccactcccc
cctccaaggggtacctaccttctggaggcctgggaccctcatgactctcctccttgttcc
tggacagcgccaggcagagcggatgtctcagattaa

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