Sciurus carolinensis (gray squirrel): 124984756
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Entry
124984756 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-15-like
KO
K16500
protocadherin-15
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
124984756
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ncar03037
]
124984756
04515 Cell adhesion molecules [BR:
ncar04515
]
124984756
Cilium and associated proteins [BR:
ncar03037
]
Primary cilia and associated proteins
USH complex and associated proteins
124984756
Cell adhesion molecules [BR:
ncar04515
]
Cadherins
Protocadherins
124984756
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
ECD
PCDH15_12th
Ig_CLSTN
Ig_Cad99C_N
Cadherin_FAT4_N
Cadherin_CELSR2_9th
CDH23_a-b
Motif
Other DBs
NCBI-GeneID:
124984756
NCBI-ProteinID:
XP_047408762
LinkDB
All DBs
Position
5:complement(106493493..107436444)
Genome browser
AA seq
1793 aa
AA seq
DB search
MLQQFFLWKCLASGIVIGSLFAACLGQYDDDWQYEDCKLARGGPPATIVAIDEESRNGTI
LVDNMLIKGTAGGPDPTIELSLKDNVDYWVLLDPVKQMLFLNSTGRVLDRDPPMNIHSIV
VQVQCINKKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNEFTPVGTTVFTGFSGDNG
ATDIDDGPNGQIEYVIQYNPEDPTSNDTLEIPLMLSGNVVIRKRLNYEDKTCYFVIIQAN
DCAQNLNEWRTTTTMLTVDILDGDDLGPVFLPCVLVPNTRECHPLIYQAAIPSXELRSPE
ELNPTVVTPPIQAIDRDRNIQPPSDRPGILYSVLVGLDIEDYQWFFHMHPRTAEXSLLEP
VNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPSYQGYILESAPVGA
TISDNLDLTTPLRIVALDKDIEDVPPGGVPTKDPELHLFLNDYTSVFTVTQTGITRYLTL
LQPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYVYTDMRPG
DSVIQLTAVDTDEGSNGEITYEILVGAQGDFIINKTTGLITIALGVELIVGRTYALMVQA
SENAPPAERRHSICTVYIEVLPPNNQSPLHFLQLMYSLEISEAMRIGAVLLNLXATDREG
DPITYAIENGDPQRVFNLSETTGILTLGKALDRESTDRYILIVTASDGRPDGTSTATVNV
VVTDVNDNAPVFDPYLPRNLSVVEEEVNAFVGQVRATDPDAGINGQVHYSLGNFNNLFRI
TSNGSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYT
VVVEENLPAGTTFLKIEAKDVDLGANVSYRIRSPEVKHFFALHPFTGELSLLRSLDYEAF
PDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPIFSKRIYKGMVAPDAVKGTPI
TTVYAEDADPPGLPASRVRYRVDDLQFPYPASIFDVEEDSGRVITRVNLNEEPTTIFKLV
VVAFDDGEPVMSSSATVKILVLHPGEIPRFTQEEYRPPPVSELATRGTTVGVISAAAINQ
SIVYSIVSGNEEDKFGINNITGVIFVNAPLDYETRASYVLRVQADSLEVVLANLRVPSKS
NTAKVYIEIQDENDHPPVFQKRFYIGGVSEDARMFASVLRVKATDKDTGNYSAMAYRLII
PPIKEGKEGFVVETYTGLIKTAMLFHNMRRSYFKFQVIATDNYGKGLSGKADVLVSVVNQ
LDMQVIVSNVPPTLVEKKIEDLTEILDRYVQDQIPGAKVVVESIGARRHGDAFSLEDYSK
CDLTVYAIDPQTNRAIDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKK
RGESLGYTEGALLALAFIIILCCIPAILVVLVSYRQFKVRQAECTKTARIQSALPAAKPA
APAPAPMAPPHPQPPPPPGAHLYEELGDSTMHKYEMPQYGSRRRLLPPAGQEEYGEVVGE
AEEEYEEEEEKPKKITKPKVVIREPSEEDEEVVVTIEKPPAVEPTYTTWKRARIFPMIFK
KVRGLADKRGVIDLEGEEWQRRLEEEDKDYLKLTLDQDEATESTVESEEESSSDYTEYSE
EESEFSESETTEEESESETPSEEESSTEESEESESTESEGEKARKNIVLARRKPVVEDIK
EVKGRREEPPKEQEEPTIEEEEEHPGGESDLAPVDESADLEAQDVPEEGSAESASVEGGV
ESEEESELGSSSSSSESQSGGPWGFQVPDYDRSKKAHQRKSPGANSEGYNTAL
NT seq
5382 nt
NT seq
+upstream
nt +downstream
nt
atgttgcaacagttttttctctggaaatgtttagcttctgggatcgtcattggctctctc
tttgcagcttgcttgggtcaatacgacgatgactggcaatatgaggattgcaaactagct
aggggaggaccaccagctaccatagttgctattgatgaagagagtcggaatggtacgatt
ctggtggacaacatgctgataaaagggactgctggaggaccagaccccaccatagaactc
tctttaaaggacaacgtggactactgggtgttgttggatcctgttaaacaaatgcttttc
ctgaacagcacaggcagagttctggacagagatccaccaatgaacatccactccattgtg
gtgcaggtccagtgcatcaacaagaaggtaggcaccgtcatctaccatgaagtgcgaatt
gtggtgagagataggaatgacaactcacctaccttcaaacacgaaagctactatgccaca
gtgaacgagttcactccagttggtaccaccgtatttacaggattttcaggagacaatgga
gctactgacatagatgatggcccaaatggacagatagaatatgttattcagtacaatcca
gaagatccgacttccaatgacacccttgaaattcccctcatgttgagtggaaacgtagtc
ataaggaagagactaaactatgaagataagacttgctactttgtcatcatccaagctaat
gactgtgcacaaaatctgaatgaatggaggaccaccaccaccatgctcacagtggatatt
ctagatggggatgacttaggtcctgtgtttcttccttgtgtccttgtgccaaacactcga
gagtgccatccactcatctatcaagctgccatacctagctgagaactccggtctcctgaa
gaactgaaccccactgttgttactccaccgatccaagccattgatcgggaccggaacatt
caaccaccatcagacaggcccggcatcctctattccgtccttgttggtttggacattgag
gattaccaatggtttttccatatgcatcctaggactgcagaanncagtctgctggagcca
gtaaacagagactttcatcagaaatttgatttggttattaaagctgaacaagacaatggc
cacccgcttcctgcctttgccagtctacacattgaaatattggacgagaacaaccagagc
ccctatttcacaatgccaagctatcaaggctatatacttgaatctgccccagtgggagca
accatttctgacaatctagatttaaccactcctctgagaattgtagctctagacaaagac
atagaagatgttccacctggtggagttcctacaaaagacccagaacttcacctttttctg
aatgattacacatcagtcttcactgtcacacagactggtatcactcgctacctcaccctg
ctgcaaccagtggacagggaagaacagcaaacttacacattttcgataacagcatttgat
ggtgtacaagaaagtgagccagttattgtcaatattcaagtgatggatgcaaatgacaac
actccaaccttcccagaaatatcctatgatgtctatgtttatacagacatgcgcccaggg
gacagtgtcatacagctcactgcagtcgacacagatgaagggtcaaacggggagatcacg
tatgagatcctggttggggctcagggagacttcatcatcaataaaacaacagggcttatc
accatcgctctgggggtggaactgatagttgggaggacttatgcgctcatggtccaagca
tcggaaaatgctcctcctgcagagagaaggcactccatctgcacagtgtacattgaagtg
cttcctccaaataatcaaagccctctccacttcctacagctgatgtatagccttgaaatc
agcgaagccatgaggattggtgctgttttattaaatctataggcaactgatcgagaggga
gacccaataacatatgccattgagaacggagatcctcagagagtttttaatctttcagaa
accacagggattctcaccttagggaaagcactggacagggaaagcacagatcgctacatt
ctgattgtcacagcttcagatggcaggccagatgggacctcaactgccaccgtaaacgtg
gtagtgacagatgtcaatgacaatgctccagtgtttgatccatatctgcctagaaactta
tctgtggtggaggaggaagtcaatgcctttgtgggtcaagtaagggcaacagaccctgat
gctggaataaatggccaagtgcactacagtttgggtaacttcaataatcttttccgcatc
acatccaatgggagcatttacacagcagtgaagctgaacagagaagtcagggactactat
gaacttgttgtggtggcaactgatggagcggtgcaccctcgtcattcaactctaaccctg
gccatcaaggttttggatattgatgataacagtccagtgttcaccaattcaacatacact
gttgttgttgaagagaatctgccagccggaaccaccttccttaaaatagaggccaaagat
gttgaccttggagcaaatgtgtcttatcggataagaagtcctgaagtgaagcactttttt
gcactacatccatttacaggagagctgtcccttttgaggagtttggattatgaggcattt
ccagatcaggaagcaagtatcacttttctggtggaggcctttgatatttatggaacaatg
ccacctggtattgctactgtcacagtgattgtaaaggatatgaatgattatcctcctata
tttagtaaacgaatctacaaagggatggtggctccagatgcagtcaagggtacacctatc
actacagtttatgctgaagatgcagaccctcctggattacctgcaagtcgtgtgaggtac
agagtagatgatttgcagtttccttaccctgccagtatttttgatgtagaagaagattct
ggaagagtaataactcgagtcaatcttaatgaagaaccaacaacaatttttaagttggtg
gttgttgcttttgatgatggtgagcctgtgatgtccagcagtgccacagtgaaaattctt
gtcttacatcctggagaaatcccacgattcacacaagaagaatatagacctcctccagta
agtgaacttgcaaccagggggaccacagtgggtgtaatttctgctgcggccatcaatcaa
agtattgtgtactccattgtttctggaaatgaagaagataagtttggaattaataacatc
acaggtgtcatctttgtgaatgcccctctggattatgagacaagagcaagttatgtactt
cgagtccaagccgattccctggaagtggtccttgccaatctccgagttccttcaaaaagc
aatacagctaaagtatacattgagattcaggatgaaaatgatcatcccccagtgtttcag
aaaagattctatattggaggggtatctgaggatgcaagaatgtttgcttctgtgctcaga
gtgaaggctaccgataaagatactggtaattatagtgctatggcatacagactcataata
cctccaattaaagagggcaaagaagggtttgtggtggaaacatacacaggactcatcaag
actgctatgctcttccataatatgagaagatcctacttcaagtttcaagttattgcaact
gacaactatgggaagggactgagtggaaaagcagatgtacttgtctctgtagtcaatcag
ctggatatgcaagtcattgtttccaatgtgccccctactttagtggaaaaaaagatagaa
gatcttacagagattttggaccgctatgttcaggatcaaattcctggtgccaaggtggtg
gtagagtccattggtgctcgccggcatggggatgccttttctctagaagattacagcaaa
tgtgacctgactgtctacgcaattgatccccaaaccaacagagccattgacagaaacgaa
ctttttaagtttttggatggcaagctgcttgatatcaataaagactttcaaccatattat
ggggaaggagggcgcattctggagatccgtactccagaggcagtgaccagcattaaaaag
cgaggagaaagtttaggatacacagaaggggctctgctggctctggccttcatcatcatc
ctctgctgtattcctgccatcttggtggtcttagtcagctacagacagtttaaagtacgg
caagctgaatgcacgaagacagcacgaattcaatctgcgctacctgcagcaaagcccgca
gcaccagcacctgctccaatggcaccaccgcacccgcagcccccgccccctcccggtgcg
catctctatgaagaactaggagacagcacgatgcataagtatgaaatgcctcaatatgga
agtcgacgtcgattgttaccacctgctggtcaggaggaatatggtgaggtggttggtgaa
gctgaggaggaatacgaggaggaagaggaaaagccaaagaaaattacaaaaccaaaagtt
gtaattagagagcctagtgaggaggacgaggaagtggtagtaactattgaaaagccgcct
gcagtggagcccacatacacaacatggaagagggccaggatattccccatgatctttaag
aaagtcagaggactagctgataaaagaggtgtcattgaccttgagggtgaagagtggcaa
agacgcctggaggaagaggataaagattatctgaaactaactctagaccaagatgaagca
acagaaagcactgtagaatcagaggaggaatcctccagcgattatactgagtacagtgaa
gaagaatctgagttcagtgagtctgagaccacagaagaggaatctgagtcggagacaccc
tctgaggaggagagttccactgaagaatcagaagaatctgaatccacagagtcagaagga
gaaaaagctagaaaaaacatagtgctcgcaagaagaaagcccgttgtggaggacatcaag
gaagtcaaaggcagaagagaggagccacctaaagagcaagaagaacccacaatagaagaa
gaagaggaacacccaggaggagaaagtgacctggcccctgtggatgaatctgcagacctt
gaagctcaggatgtccctgaggagggcagtgcagaatctgcttctgtagaaggaggtgta
gaaagtgaagaggaatcagaattaggcagtagtagtagtagtagtgaaagtcagtctgga
ggtccttggggctttcaggtaccagactatgacagaagcaagaaggcacaccaaaggaag
tctccaggagcaaactctgaaggttacaacacagccctctaa
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integrated database retrieval system
