KEGG   Sciurus carolinensis (gray squirrel): 124988998
Entry
124988998         CDS       T08117                                 
Name
(RefSeq) HLA class II histocompatibility antigen, DQ alpha 1 chain-like
  KO
K06752  MHC class II antigen
Organism
ncar  Sciurus carolinensis (gray squirrel)
Pathway
ncar04145  Phagosome
ncar04514  Cell adhesion molecules
ncar04612  Antigen processing and presentation
ncar04640  Hematopoietic cell lineage
ncar04658  Th1 and Th2 cell differentiation
ncar04659  Th17 cell differentiation
ncar04672  Intestinal immune network for IgA production
ncar04940  Type I diabetes mellitus
ncar05140  Leishmaniasis
ncar05145  Toxoplasmosis
ncar05150  Staphylococcus aureus infection
ncar05152  Tuberculosis
ncar05164  Influenza A
ncar05166  Human T-cell leukemia virus 1 infection
ncar05168  Herpes simplex virus 1 infection
ncar05169  Epstein-Barr virus infection
ncar05310  Asthma
ncar05320  Autoimmune thyroid disease
ncar05321  Inflammatory bowel disease
ncar05322  Systemic lupus erythematosus
ncar05323  Rheumatoid arthritis
ncar05330  Allograft rejection
ncar05332  Graft-versus-host disease
ncar05416  Viral myocarditis
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    124988998
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    124988998
 09150 Organismal Systems
  09151 Immune system
   04640 Hematopoietic cell lineage
    124988998
   04612 Antigen processing and presentation
    124988998
   04658 Th1 and Th2 cell differentiation
    124988998
   04659 Th17 cell differentiation
    124988998
   04672 Intestinal immune network for IgA production
    124988998
 09160 Human Diseases
  09172 Infectious disease: viral
   05166 Human T-cell leukemia virus 1 infection
    124988998
   05164 Influenza A
    124988998
   05168 Herpes simplex virus 1 infection
    124988998
   05169 Epstein-Barr virus infection
    124988998
  09171 Infectious disease: bacterial
   05150 Staphylococcus aureus infection
    124988998
   05152 Tuberculosis
    124988998
  09174 Infectious disease: parasitic
   05145 Toxoplasmosis
    124988998
   05140 Leishmaniasis
    124988998
  09163 Immune disease
   05310 Asthma
    124988998
   05322 Systemic lupus erythematosus
    124988998
   05323 Rheumatoid arthritis
    124988998
   05320 Autoimmune thyroid disease
    124988998
   05321 Inflammatory bowel disease
    124988998
   05330 Allograft rejection
    124988998
   05332 Graft-versus-host disease
    124988998
  09166 Cardiovascular disease
   05416 Viral myocarditis
    124988998
  09167 Endocrine and metabolic disease
   04940 Type I diabetes mellitus
    124988998
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ncar04147]
    124988998
Exosome [BR:ncar04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   124988998
  Exosomal proteins of epithelial cells
   124988998
  Exosomal proteins of breast milk
   124988998
SSDB
Motif
Pfam: MHC_II_alpha C1-set Ig_3 C2-set_2 I-set
Other DBs
NCBI-GeneID: 124988998
NCBI-ProteinID: XP_047414849
LinkDB
Position
7:complement(121830837..121835802)
AA seq 255 aa
MILNRALILGAIALTTMMSPCGSEDIVADHVAIYGVNLYQSYGPSGQYTHEFDGEEEFYV
DLQKKETVWSLPMFSKITYFDPQFALQNLAISRHNLDILIKRSNSTAAPNKVPDVTVFPK
SPVMLGKPNILICLVDNIFPPVINITWLSNGRSVTEGVSETSFLSKSDHSFLKIAYLTFL
PSDDDVYDCKVEHWGLDKPLLKHWEPEIPNPVSELTETVVCALGLIVGLVGIIVGTIFIF
QGLRSDGAPRQPEPL
NT seq 768 nt   +upstreamnt  +downstreamnt
atgatcctaaacagagctctaatcctgggggccattgctctgaccaccatgatgagcccc
tgtggaagtgaagacattgtggctgaccatgttgccatctatggtgtaaacctctaccag
tcttatggtccctctggccagtatacccatgagtttgatggagaggaagaattctacgtg
gacctgcagaagaaggagactgtctggagccttcctatgtttagcaaaattacatatttt
gacccacagtttgcactgcaaaacttagctatatcaagacacaacttggacatcctgatt
aaacgctccaattctaccgcagctcccaataaggttcctgacgtgactgtgtttcccaag
tcacctgtgatgctgggtaagcccaacatactcatctgtcttgtggacaacatctttcct
cctgtgatcaacatcacatggttgagcaatgggcgctcagtcacagaaggtgtctcggag
accagtttcctctctaagagtgaccattccttcctcaagattgcttacctcaccttcctc
ccttctgatgatgatgtttatgactgcaaagtggagcactggggcctggacaagccactt
ctgaaacactgggaacccgagattccaaaccctgtgtcagagctgacagagactgtggtc
tgcgccctggggttgatcgtgggcctcgtaggcatcattgtggggacaatcttcatcttt
caaggcttacgctcagatggtgcccccagacaaccagagcccttgtga

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