Notothenia coriiceps (black rockcod): 104948891
Help
Entry
104948891 CDS
T04920
Name
(RefSeq) interferon regulatory factor 3-like
KO
K05411
interferon regulatory factor 3
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc04620
Toll-like receptor signaling pathway
ncc04621
NOD-like receptor signaling pathway
ncc04622
RIG-I-like receptor signaling pathway
ncc04623
Cytosolic DNA-sensing pathway
ncc05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
104948891
04621 NOD-like receptor signaling pathway
104948891
04622 RIG-I-like receptor signaling pathway
104948891
04623 Cytosolic DNA-sensing pathway
104948891
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
104948891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncc03000
]
104948891
04131 Membrane trafficking [BR:
ncc04131
]
104948891
Transcription factors [BR:
ncc03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
104948891
Membrane trafficking [BR:
ncc04131
]
Autophagy
Other autophagy associated proteins
TRIM-directed selective autophagy
104948891
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
IRF-3
IRF
DUF2218
Motif
Other DBs
NCBI-GeneID:
104948891
NCBI-ProteinID:
XP_010773430
UniProt:
A0A6I9NG52
LinkDB
All DBs
Position
Unknown
AA seq
461 aa
AA seq
DB search
MSKPLLIPWLRTKINSGQYDGVQWTNPEETEFSVPWKHALRQDSSNTDILIFKAWAETSG
NGRAPGDHSVWKRNFRSALRAKGFKLISDNKNDGANPHKVFRWPQVSASGANSAAGSQEQ
DDPDLSEYFPLPTQESQVVPNFEDYLYLPEDTVFAAEHPSHHDILQECLMGLNIGPDTEG
TAGFELPPEQQQLQNPAVIGGHALPGQQQFPAMYEGEAGLPEQPAGPIEGAVGGAYDEQF
AEHFKHSVNNTRDGEHFKTHFRISVYYRGVKVLEQLVDNEVGIRLVYRPQLTGTVLDPES
GLSLVSLPSPGAMLDQTQANLTQRILDKLGEGLDVGESGSVVYGQRRGEIKAFWSRSKFD
ESRQPQEISKLQPQPLYMFKEFIQGILDFINGKESPPSSLFFCLGEKWPDKDNRPWDKKL
ITVEVVLTSMEQLKNMAVVGGASSLQSVELQMSLEEMMDQC
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaccgctgcttataccgtggctgcggaccaagattaacagcggccagtatgac
ggtgtccagtggaccaacccggaagaaacagagttctccgtcccatggaaacacgcttta
agacaggactcctccaacacggacatcctcatctttaaggcctgggcagagacgagtggc
aatggccgagctcccggagaccattcagtctggaagaggaacttccgcagcgccctccga
gcaaaaggcttcaagctgatctcagacaataagaacgacggcgctaacccccacaaagtg
tttcgctggccgcaggtgtcagcttcaggagctaactctgctgctggatcccaggaacaa
gatgatcccgatttgtctgaatattttccccttcctacacaagagagccaggtcgtccca
aacttcgaagactatctctatcttccagaagacactgtgtttgcagcagaacaccccagc
catcatgatattctgcaggagtgtctgatgggactgaacattggcccggacacagagggc
actgcaggctttgagcttcctcctgagcaacagcagctccagaacccggctgtgattggt
ggacatgcgttgcctgggcaacagcagtttccagcgatgtatgagggtgaagctgggttg
cctgagcaaccggcaggaccaatagagggagctgtaggcggggcttatgacgagcagttt
gctgagcatttcaaacattctgtgaacaacaccagagatggagaacatttcaagacacat
ttcaggatatccgtgtactacagaggggtgaaggtgttggagcagctggttgacaatgaa
gttggaatccgcttggtctacaggcctcaactcacagggacagttttggatcccgagtcc
ggcctgtcgctcgtctctctgccaagtcctggagccatgctggatcaaacccaggccaac
ctgacccagcgcatcctggacaagctgggcgagggtttggacgtcggagagtcgggcagt
gtggtctacggccagcggcggggtgaaatcaaagcattttggagccgctccaaatttgac
gagagcagacagccgcaagagatttctaaactgcagcctcaaccactgtacatgttcaag
gaatttatccaaggtatattggacttcataaatgggaaggaatcccctcccagctccctg
ttcttctgcctcggggagaagtggccggataaagacaacaggccttgggataagaaactc
atcacagtggaggtggtcctgacttcgatggagcagctgaaaaatatggctgttgtaggc
ggcgcctcctcgctgcagtctgtggagctgcagatgtctctggaggagatgatggaccag
tgctga
DBGET
integrated database retrieval system
