Notothenia coriiceps (black rockcod): 104951183
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Entry
104951183 CDS
T04920
Name
(RefSeq) smith-Magenis syndrome chromosomal region candidate gene 8 protein homolog
KO
K23611
guanine nucleotide exchange protein SMCR8
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
104951183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncc04131
]
104951183
Membrane trafficking [BR:
ncc04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
104951183
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Folliculin
PHC2_SAM_assoc
Motif
Other DBs
NCBI-GeneID:
104951183
NCBI-ProteinID:
XP_010776123
UniProt:
A0A6I9NM69
LinkDB
All DBs
Position
Unknown
AA seq
876 aa
AA seq
DB search
TASLQTSAVCSQVGPKPVLTIPDDPRVIGLFDLNHFSVRIMSVDYQASGPGHTPPASPGP
RLNFSEDSKVILGDSADDAFAYVHHMTLYDLEARGMVRPFCVAYICSDQTKLMENLSELS
TGFSHASDSLKTGNRQAFSMELQRKLQELEYTRLTLHQETDPPPRKVNAKQGEKADEIEA
VEHSILNHRELLRQVTSYPNRKLKHPDFLPYDPADSLTDPTALLPPEPGPSPSPSFSFSS
SSCRSERHLKPLQELCNSYFLSLMKEQLADTERRLRGDRSVLRTTSTIQSLSRRLTLTNF
LFELWRPEEGSEEERESAEAELQRATGNKSGVEAFQSEPMSMESFCSCVEEIPIKMEAGD
DRTMTPDPSVATEMTGSMSSSDSIEVLGTEKSYQTQHGSDSRETSVGMTDSSYRRAAVDS
GVRRGRVYARRANSEDSIEVLSTTESICPDDLTAITEEESDQQALTNGFEKEEEILAEFE
SDDVLRKRKTFKASTSVSEDENEEQAQEYDGRVNGEETSKQRTVSGEVIMKEEKVVECLM
SNHVHEVNGPEKTSKPMPDEVTVESKPRLSGVHRTVRSVLDLHVNFTPALALAEVDRWSP
PCSPLRLLSVDEASDCTSITGSTEPLSPTQNVHSSSRSHRRRRRRKAGLRALRFLKQNSF
SQHALFCLLSGRPLVVIGGDESLVRKLVDALSLFLPAPGPDGSAVKASLTAALQLTDLLT
WRLIGIHRSSSSSLASILHSLTRYSRYLALLDLDQRTLQCPSYSGSLIGRLADPHSGISR
GITYLLHLESCLTALANQALLCTFKPALLRPHKAGGNDGAEEKDFLLMRGLCTSENDLKV
MNFLCDLIKQRHAGRGPPVLRFSYNSMHLHKNTYTA
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
actgcgtctcttcaaacctctgctgtgtgttcacaggttggacccaaacctgtgctgacg
ataccggacgaccccagggtcatcggattgttcgacctgaaccacttctctgtgcgcatc
atgtctgtggactaccaggcgtccggcccgggccacacccctcctgcatcccctggcccc
cgcctcaacttcagcgaggactccaaagtgattcttggggattcggcggacgatgcattt
gcctatgtgcaccacatgaccctgtatgaccttgaggctcggggcatggtgcgtcctttc
tgcgtggcgtacatttgttccgaccagacgaagctgatggagaacttatctgagctgtcg
acaggcttctctcatgcctccgacagcctcaagacggggaacagacaggcgttctctatg
gagctgcagagaaaattacaagagcttgagtacacacggttgaccctgcatcaggagact
gatcctcctccaaggaaggtaaacgcgaagcagggagagaaagcagatgagattgaagct
gtagagcattcaatcctaaatcatagagagctcctgcgccaggtcacttcctacccaaac
aggaagctgaaacatcctgacttcctgccttacgacccagccgactcgctcactgatcca
acagcgttactgcctcctgagcccggtccctccccctccccctccttctccttctcctcc
tcctcctgcaggtctgagcgccatctgaagcctctccaggagctttgcaactcctacttc
ctgtctctgatgaaggagcagctcgctgacacagagcgccgtctacgtggcgacaggagt
gtgctgcggacgactagcaccatacagtcgttgtccaggaggctcacgctcaccaacttc
ctgtttgagctttggaggccagaggagggatctgaggaggagcgagagagcgctgaggcc
gagctgcagagggcgacggggaataagagcggcgtcgaggcctttcaatccgaaccaatg
agcatggagtcgttctgctcctgcgtggaggagatccccatcaaaatggaggcaggagat
gacaggacaatgacccctgaccccagcgttgccacggagatgacggggagtatgagcagc
agcgacagcatcgaagtgctcgggacggagaagtcttatcagacccagcatggctctgac
agcagagaaacctcagtcgggatgacggactcctcttacaggcgagccgcagtagattca
ggcgtcaggcgcggcagagtgtacgccagacgagccaacagtgaggacagcatcgaggtt
ctgagcaccaccgagtccatctgtcctgacgacctcaccgccatcaccgaggaagagtcg
gatcaacaagctcttactaacggctttgagaaagaggaggaaatactggcagagtttgaa
tctgacgatgtcctcaggaagaggaagacattcaaagcaagcacttcagtttctgaggat
gaaaacgaggagcaggctcaggaatatgacggtcgtgttaacggagaagagacctcaaag
caaagaactgttagtggtgaggttataatgaaagaagagaaggtcgttgaatgtttgatg
agcaatcatgtccatgaagtgaacggtccagagaagacgtccaaaccaatgccagatgaa
gtaacggtggagtcgaagcctcgcttgtctggagtccatcggacggtgcggtcggtactt
gaccttcatgtgaacttcacccctgctctagctctggcggaggtcgaccgctggtctccg
ccctgctctcctctccggctgctgagcgtggacgaggcgtccgactgcaccagcatcacc
ggctccaccgagccgctgtctccaactcagaacgtccacagcagctcccgctcccatcgg
aggaggaggaggaggaaggccggactgagagccctcaggttcctcaaacagaactccttc
tcccagcatgccttgttttgtctcctgagcggccggccgctggtcgtcatcggaggcgac
gagagtttggtcaggaagctggtggacgctctgagtctcttcctgccggctccaggtcct
gatgggagcgctgtgaaggcgtctctgaccgcagcgctgcagctgactgacctgctcacc
tggagactgataggaatacacagatcctcctccagctctctggccagcatccttcactct
ctgactcgctacagtcgttacttggcgctgttggacctggaccagaggacgctgcaatgt
ccgtcgtactccggctctctgattggtcgactggctgaccctcactctggcatcagccga
ggaatcacctacctgctgcacctggagagctgcctgactgcactggccaaccaggcgctg
ctgtgcacctttaaacctgcgttactacgtccacacaaagctggagggaacgatggcgca
gaggaaaaggacttcctgttgatgcggggattgtgcaccagtgagaatgatttgaaagtg
atgaacttcctgtgtgacctcatcaaacagcgccacgcaggacgtggaccaccggtttta
agattctcttacaattcaatgcacttgcataagaatacatatacggcataa
DBGET
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