Notothenia coriiceps (black rockcod): 104953326
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Entry
104953326 CDS
T04920
Symbol
kdm2b
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
104953326 (kdm2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncc03000
]
104953326 (kdm2b)
04121 Ubiquitin system [BR:
ncc04121
]
104953326 (kdm2b)
03036 Chromosome and associated proteins [BR:
ncc03036
]
104953326 (kdm2b)
Enzymes [BR:
ncc01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
104953326 (kdm2b)
Transcription factors [BR:
ncc03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
104953326 (kdm2b)
Ubiquitin system [BR:
ncc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
104953326 (kdm2b)
Chromosome and associated proteins [BR:
ncc03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
104953326 (kdm2b)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
104953326 (kdm2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
F-box
JmjC
Cupin_8
LRR_4
Tra_M
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
104953326
NCBI-ProteinID:
XP_010778560
UniProt:
A0A6I9NUG5
LinkDB
All DBs
Position
Unknown
AA seq
1376 aa
AA seq
DB search
MAQAVETCAESGRRLRSICRRMYDENEDLSDVEEIANIRGFSVEEKLVSDSYSASFVLCM
EGKDFSYEYVQKDALRTPLIFKEKDGLGIRMPDPEFTVSEIKGLVGSRRSVDVMDVSTQK
GSEMSMAQFVRYYETPEEEREKLFNVISLEFSHTKLENLIKRPTVVDQVDWVDNTWPPDL
KQSQTEATNVISDMKYPKVQRYCLMSVKGCYTDFHIDFGGTSVWYHVFKGQKVFWLVPPT
PHNLALYEDWVLSGKQSDIFLGDRADGCQRVELKQGYTFFIPSGWIHAVYTPEDSLVFGG
NILHSFNIPMQLTIHEIENRTKVNSKFRFPFYNEICWYVLERYLHCLTKRSYLSREVRKE
PVPTDYETKVNTGSPSSDSRIQDLNEDSCETQVRDGEKPERGAQDGPSSPDNRRGQHLKA
VLSVDSEDSCNPGSTSLEFPQTPSDSPAEESVTKWTHLTEFELSGLRKLVEKLESLPENK
KCVPEGIENPQALLEDMKVLLKEHADDDPQLAITGVPVVYWPKKTIKPRPPNRPKPKMAA
SPASAVKLSACRGTSGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCIMR
QCIAPVLPHTAVCLVCGEAGKEDTVEEEEEKFNLMLMECSICNEIVHPNCLKVKDSNGVV
NDELPNCWECPKCNHAGKTGKASKQKRGPGFKYASNLPGSLLKEPRLNRDSKDEPDSPIV
ATVTALTATSALKRKAEREEVPKRKDDEPPKKRPPLLSLDGTPRPRIEDNPLRKKRKLFD
TNDEPVIVKKKKKLSKPDDPLTPKRHIKTENDHDEEDDQVDHEGDRFSLERIKLKGKKEY
DDEDQEEDEEGEETVKKERDRSAEDKAKVLLSPLIRTSAIRESEQTTNSPRAGPSSDSGD
AQLKARHQRRRLPNKELSKEFKQETPKAADQNHGSVKTEDGSANHNRRQLKKEDSMTNQN
RKPLKTEDSSTNQSRRALKTEEGLTNQNRRPLKTEDSLANQNHRPVKTEPENEVDEQKPR
WPLNNGGSDLGDWLPHRGREGNDTTRGYSPLGWNRGTQITPICPRPLPCRSPPKCIQMER
HVIRPPPISPPPDRLSLNDGETHVMRREMWMTVFSHLTHRDLCVCMRVCRTWNRWCCDKR
LWKHINLNRCKSITPLMLSGIIRRQPVALDLSWTNISKKQLSWLINRLPGLRVLLLSGCS
WVAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDNRSKLRNVEVLRL
AGLDITDTSLRLLIRYMPSLSKLDLSYCNHVTDQSVNILTAAGTTTRDSLTDINLSVCNR
VTDQSLTYFKRCGSVCHIDLRYCKQVTKEGCDQFIAEMSVSVQFELIEEKLLQKIS
NT seq
4131 nt
NT seq
+upstream
nt +downstream
nt
atggcccaggccgtggaaacgtgtgccgaatccggacgcaggctgcgctccatctgccgg
aggatgtacgatgaaaacgaggatctgtccgatgtggaagaaattgcaaacatcagaggt
ttcagtgtggaggaaaagctggtcagtgacagttacagcgcctcatttgtgctctgcatg
gagggtaaagacttctcttatgaatatgtgcaaaaggatgctctcaggaccccactcatt
tttaaagagaaagatgggcttgggatcagaatgccggatccagaatttacagtcagtgaa
attaaaggattagttggcagtcggcgctccgtggatgtgatggatgtgagcactcagaaa
ggctctgagatgagcatggctcagtttgtgcgttattatgagacaccagaggaagagcgg
gaaaaactcttcaacgtcatcagcttagagttcagccacactaagctggaaaacctcatc
aagcggcccacagtggtggatcaagtggactgggtagacaacacgtggccccctgatctg
aaacagagccaaacagaagccaccaatgtaatctcagacatgaagtaccctaaagtgcaa
aggtattgtttgatgagtgtaaagggctgctatacagacttccacattgatttcggtgga
acctctgtttggtatcacgtattcaaaggacaaaaagtgttttggcttgtgcctccgacc
cctcataaccttgccctttatgaggactgggtcctgtcaggcaagcagagtgatatcttc
ctgggagaccgagctgacggatgccagagagtggagcttaagcaaggatacaccttcttt
atcccatctgggtggatccatgctgtctacactccagaggactcactggtgtttggaggc
aatattctgcacagcttcaacattcctatgcagcttaccatccatgagatagagaatagg
actaaggttaattcgaagttccgttttcccttctacaatgagatttgctggtatgtcctg
gagagatatctgcactgcctcacaaaacgttcctatttatctcgggaggtccgcaaagag
cctgtgccaactgattatgagacaaaggtcaacacagggagcccctcctctgactccagg
atccaggacctgaacgaggactcatgtgagactcaggtcagggatggtgagaaaccagag
agaggcgctcaggacggacccagctctcctgacaaccggaggggtcagcacctcaaagct
gttttatctgtggactctgaggacagctgtaaccccggttccacctctctagagttcccc
caaaccccctctgactccccagccgaggagtctgtgactaaatggacgcatttgacagag
ttcgaactgagcggactcaggaaactggttgagaagctggagtcgctccctgaaaataag
aaatgtgttccagagggaatagagaacccacaagccctgctggaagacatgaaggttctc
ttaaaagaacatgccgatgacgacccacaattagccatcactggggttcctgtggtgtac
tggcccaagaaaaccataaagccccggcctccaaaccggccgaaacctaagatggcagct
tctcctgcctcagcagtcaagctgtcagcgtgtcggggaacatctggcgccaggaggagg
cggacgcgctgccggaagtgtgaggcatgcctgcggacggagtgtggagagtgccacttc
tgtaaagacatgaagaagtttggtgggccgggccgcatgaaacagtcctgcatcatgagg
cagtgcattgcacctgtcctgccccacaccgccgtgtgtctcgtctgtggagaggcaggg
aaagaggacacagtggaggaagaggaggagaagtttaacctcatgctcatggagtgctcc
atctgcaatgagattgttcatcctaactgtcttaaggtaaaagattcaaacggagtagtc
aatgatgaattgcccaactgctgggagtgcccaaagtgcaaccatgctgggaagacaggg
aaagcctcaaagcaaaaaagggggccaggatttaagtacgcgtccaaccttcctggctct
ctactgaaggagccgcggttaaaccgggattcaaaagacgaacctgactcgccgatagtc
gcaactgtgactgctctgactgccacatctgctcttaagagaaaggcagagcgggaggaa
gtccctaagaggaaagatgacgagccaccgaagaaacgcccccccttgctgtctctggat
ggtacgccccggccgaggattgaggacaacccactgaggaaaaagaggaaactttttgac
accaatgatgaacctgtcattgtaaaaaagaagaagaaactctcaaaaccggatgaccct
ctgactcccaagcggcacatcaagaccgagaacgatcacgatgaagaagatgatcaggta
gatcacgaaggagatagattttctttggaaaggattaagttaaaggggaaaaaagagtat
gacgacgaggaccaagaagaagatgaggagggagaggaaacagtgaaaaaagagagagac
cgcagtgcagaggacaaagccaaggtgttattaagtcccctgataagaacctctgccatc
agagaaagtgaacaaaccacaaactctcccagagcgggaccgagcagcgactcaggagac
gctcagctgaaggctcgccatcagagacgacggctccccaacaaggagctgagcaaagag
ttcaaacaggagactcccaaggcagcggaccagaaccacggctcggtgaagacagaggac
ggctcagccaatcacaaccgacgacaactcaagaaagaggactcaatgaccaatcagaat
cgcaaaccgttaaaaacagaggactcttccactaatcagagccgcagggcccttaaaacg
gaggagggtttgaccaatcaaaacaggcggccactgaaaaccgaggacagtctggccaat
caaaaccacaggcctgtaaaaactgagcctgagaacgaggtggacgagcaaaagccaaga
tggcctcttaataacggcggcagtgatctgggggactggctgccacacagggggcgagag
gggaacgacacgacgcgaggttactcgccgctcggatggaacaggggcacccagatcaca
ccgatatgcccccgaccacttccctgcaggtccccgccaaaatgcatccaaatggagcgc
catgtgatccgtcctcctcccatcagccccccgccggacagactctcgctgaacgacgga
gaaacacacgtgatgcgcagggagatgtggatgacggttttcagtcacttgactcacaga
gatctctgcgtgtgcatgcgtgtctgcaggacgtggaacagatggtgctgcgataagagg
ctctggaagcacatcaatctgaaccggtgtaagtccatcactcctctcatgctgagtggg
atcatccgcaggcagccggtggctctggacctcagctggaccaacatctccaaaaaacaa
ctcagctggctcatcaacagactgccaggtctgcgggtgctgctgttgtcagggtgctcc
tgggtggcggtctctgccctctgcacctccagctgtcctctcctgcggaccctggatgtt
cagtgggtcgagggactgaaagacgcccagatgagggacctgctgtctcctcctacagat
aacaggccaggtcagttggacaacaggagtaagctgcggaacgtggaggtcctgcggctg
gcgggcctggacatcacggacacgtctctgcgcctcctcatccgctacatgccctcgctg
tccaagctggacctcagctactgcaaccacgtcacggaccagtcggtcaacatcctgacg
gcggccgggacgaccaccagagactcgctcactgacatcaacctgtcagtctgtaacagg
gtcactgaccagtcgctgacctacttcaagcgctgtgggagcgtctgtcacatcgacctg
cgatactgcaagcaggtgaccaaggagggctgcgaccagttcatcgcagaaatgtccgtc
agcgtgcagtttgaactgatagaggagaaactgctgcaaaagatcagctag
DBGET
integrated database retrieval system
