Notothenia coriiceps (black rockcod): 104957017 Help Entry 104957017         CDS       T04920                                  Symbol thbs1 Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism ncc  Notothenia coriiceps (black rockcod) Pathway ncc04115   p53 signaling pathway ncc04145   Phagosome ncc04148   Efferocytosis ncc04350   TGF-beta signaling pathway ncc04510   Focal adhesion ncc04512   ECM-receptor interaction ncc04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:ncc00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     104957017 (thbs1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     104957017 (thbs1)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     104957017 (thbs1)    04148 Efferocytosis     104957017 (thbs1)   09143 Cell growth and death    04115 p53 signaling pathway     104957017 (thbs1)   09144 Cellular community - eukaryotes    04510 Focal adhesion     104957017 (thbs1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     104957017 (thbs1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:ncc04131]     104957017 (thbs1)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:ncc00536]     104957017 (thbs1) Membrane trafficking [BR:ncc04131]  Endocytosis   Phagocytosis    Opsonins     104957017 (thbs1) Glycosaminoglycan binding proteins [BR:ncc00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    104957017 (thbs1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C EGF_3 TSP1_ADAMTS Laminin_G_3 cEGF EGF TSP1_CCN Laminin_G_2 Motif Other DBs NCBI-GeneID:  104957017 NCBI-ProteinID:  XP_010782919 UniProt:  A0A6I9NY18 LinkDB All DBs Position Unknown AA seq 1169 aa AA seqDB search MKLTGIFLLLMCWSCEGARVAESRDDNSVYDLFELVKVPKKNHGVTLVKGDDPYSPAYKI LNPDLIPPVPESAFRDLIDSIHAERGFLLLLNFKQFKRTRGSLLTVEKKDGSGPVFEIVS NGKANTLDIVFSTENKQQVVSIEDADLATGQWKNITLFVQEDRAQLYAGCEEVNTAELDA PIQSILTLETPASSQLRIGKGAVKDRFMGVLQNVRFVFGASLEAILRNKGCQSSIRTDSL VLENLNGSSAIRTEYTGHKTKDLQMVCGFSCEDLIGMFKELKGLGVVVKELSNELRQLTD ENKLIKNRIGIHSGVCIHNGIVHKNRDEWTVDDCTECTCQNSATVCRKISCPLLSCANAT IPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINSNCEGTSVQTR DCYLQECDKRFKQDGNWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLGGKNCEGEGRQT EKCEKSPCPINGNWGPWAPWDTCTLTCGGGVQNRKRLCNNPESKYGGKECIGNPKDTQMC NKIACPVDGCLSNPCFAGAKCTSLPDGSWKCGKCPAGYAGNGIKCKDVDECKEVPDACFE FNGVHRCENTEPGYNCLPCPSRYSGPQPFGRGVEQAAAKKQVCTARNPCLDGSHDCNKNA RCNYLGHFADPMFRCECKPGYAGNGHICGEDTDLDGWPNSDLVCVENATYHCKKDNCPNL PNSGQEDHDKDGMGDACDNDDDNDGIPDDRDNCPFVYNPRQYDYDRDDVGDRCDNCPYNS NPDQTDTDNNGEGDACAVDIDGDGIMNEKDNCPHVYNVDQKDTDLDGVGDMCDNCPLEHN PDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDND GVPDDKDNCRLVFNTDQLDSDGNGRGDACKDDFDQDNVPDIYDVCPENFDISETDFRKFQ MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNSVDFSGTFFINTERDDD YAGFVFGYQSSSRFYVVMWKQITQTYWSNKPTKAQGYSGLSIKMVNSTTGPGEHLRNALW HTGNTPGQVRTLWHDPKSVGWKDFTAYRWHLIHRPRTGLIRVVMYEGKKIMADSGNIYDK SYAGGRLGLFVFSQEMVYFSDLKYECRDT NT seq 3510 nt NT seq  +upstreamnt  +downstreamnt atgaagttgacagggatatttttgcttctgatgtgttggagctgcgagggcgcgcgagtt gcagagagtcgagacgacaatagcgtgtatgacttgtttgagctggtcaaagtcccgaag aagaaccatggggtgaccctggtgaaaggagacgacccgtacagccccgcttacaagatc ctcaacccggacctgatccccccggtccccgagagcgcctttagggacctgatcgactcc atccacgccgagagggggttcctcctcctgctcaacttcaagcagttcaagcggaccagg ggctccctcctgaccgtggagaagaaggacggatccggacccgtgttcgagatcgtctcc aatggaaaggcgaacaccctcgacatagttttctccaccgagaacaagcagcaggtggtt tccattgaagatgcggacctggctacggggcagtggaagaatatcacgctgttcgtgcag gaggaccgcgcgcagctgtacgccggatgcgaggaggtgaacaccgcggagctggacgcg cccatccagagcatcctcaccctggagaccccggccagctcccagctccggatcggcaag ggagccgtgaaggacaggttcatgggggtcctacaaaacgtccggtttgtgtttggagcg tcactggaagcgatcctgcgcaacaaaggatgccaaagctctataaggaccgactccctg gtcctggagaacctcaatggatcctcagcaatcagaacagagtacaccggacacaagact aaagacctgcagatggtctgtggcttctcctgtgaggatctgatcggcatgtttaaggag ctgaagggcctcggtgtggtggtgaaggagctgtccaatgagctccgccagctgacggat gagaacaagctgattaagaaccgcattggcattcacagcggagtctgcatccacaacggc atcgtgcacaagaacagagacgagtggaccgtggatgactgcaccgagtgcacttgtcag aactctgctaccgtgtgccgcaagatctcttgccccctgctctcctgtgctaatgctact attcctgatggagagtgctgccctcgctgtggaacaccgagcgactatgcagaagacgga tggtcgccgtggtctgaatggacccattgttccgtgtcatgtgggcggggtatccagcag cgtgggcgctcttgcgaccgtatcaatagcaactgcgagggcacctctgtgcagacccgc gactgctacctccaggagtgtgacaagcgattcaagcaggacggcaattggagccattgg tcaccctggtcctcctgctccgtcacctgtggtgctggtgtgatcacccgtatccgcctt tgcaactcccccacccctcagcttggaggcaagaactgtgagggagaaggacggcaaact gagaagtgtgagaaatctccgtgcccaatcaatggtaactggggaccctgggctccatgg gacacctgcactctcacctgtggaggcggtgtccagaatcgaaaacgcctgtgcaataac cctgaatccaaatacggtggcaaagagtgtatcggtaatcccaaagacacccagatgtgc aacaagatagcctgtccagttgatgggtgcctgtccaacccctgctttgctggagccaag tgcaccagtttacctgatgggtcctggaagtgcggaaagtgcccagctggctacgctggc aatggtatcaagtgcaaagatgttgatgagtgcaaggaggtcccagacgcttgctttgag tttaatggcgtgcaccgctgtgagaacactgagcctggctacaactgtctgccatgtcct tctcgctactcaggaccccaaccgtttggcagaggtgtggagcaggctgctgccaagaaa caggtgtgcacagcccgtaatccctgcctcgatggaagccatgactgcaacaaaaacgcc cgttgtaactaccttggacactttgccgatcccatgttccgctgtgagtgcaagcccggc tatgctggcaacggccatatctgcggagaggacacggatctggatggatggcccaactct gacctggtgtgtgtggagaacgccacctaccactgcaagaaggacaactgtcctaacctc cctaactctgggcaagaagatcacgataaggatggcatgggagatgcctgtgacaacgat gatgacaatgatggcattcctgacgatagggacaactgcccattcgtttacaaccccagg cagtacgactatgaccgcgatgatgttggtgaccgctgcgacaactgcccttacaatagt aacccagaccaaacggacacagacaacaatggagagggagacgcctgtgctgtggacatt gatggagatggcataatgaatgagaaagacaactgcccccatgtgtacaatgtcgaccag aaggacacagatctggacggcgtgggagacatgtgtgataactgccctctggaacataat ccagatcaggtggattcagatgatgaccgagtgggagacaagtgtgacagcaaccaggac atcgatgaggacggacaccagaacaacctggacaactgcccgtatatccccaacgccaac caggctgaccatgacaaagatggcaagggagacgcctgtgatcatgatgacgataacgat ggtgtccctgatgacaaggacaactgcagacttgtcttcaacactgaccaactggactct gacggtaatggtcgtggagatgcttgcaaagacgactttgaccaagacaacgtgcctgac atctacgacgtgtgcccagaaaactttgacattagtgagacagacttccgcaagttccag atggttcctctcgaccccaaaggcacttcccagattgatcctaactgggtcgtccgccat caaggcaaagagctggttcagactgtcaactgcgaccctggaatcgctgtcggttatcac gagttcaattcagtggacttcagcgggactttcttcatcaacactgagagggatgatgat tacgccggctttgtgtttggataccagtccagttccaggttctacgtggtgatgtggaag cagattacacagacatattggtcgaataaacccaccaaggcccagggctactctggcttg tccattaaaatggttaactccaccactggtccaggagagcacctcaggaacgccctctgg cacacaggaaatacaccaggacaggtccgcactctctggcatgaccccaagagcgttgga tggaaagacttcaccgcctacagatggcatctgatccacagaccgagaacaggacttata agagttgtgatgtacgagggcaagaagatcatggcagattctggtaacatctatgacaag tcatatgctggcggcaggctaggtctttttgtcttctcacaagagatggtatacttctca gacctcaagtatgaatgcagagatacctaa

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