Notothenia coriiceps (black rockcod): 104958634
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Entry
104958634 CDS
T04920
Symbol
smcr8
Name
(RefSeq) smith-Magenis syndrome chromosomal region candidate gene 8 protein
KO
K23611
guanine nucleotide exchange protein SMCR8
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
104958634 (smcr8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncc04131
]
104958634 (smcr8)
Membrane trafficking [BR:
ncc04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
104958634 (smcr8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Folliculin
Motif
Other DBs
NCBI-GeneID:
104958634
NCBI-ProteinID:
XP_010784729
UniProt:
A0A6I9P2T2
LinkDB
All DBs
Position
Unknown
AA seq
922 aa
AA seq
DB search
MIGSPDVVAFTKEDDFGQADPDPWAIPDEFSVPLSPISDSNPWAKTSYAKFTKDFILISE
FSEQVGPQPLLTIPEDPKVCGTFDLNYFSLRIMSVDYQASFVGHPPGSGYPRLSFVEDSR
VVLGDSKEGAFAYVHHLTLYDLEARGFVRPFCMAYVSADERKIMLQFQELSLRFSQASEC
LKAGNRRAFAKELQRKLRDLEYTHSVLQREEGLQREAGTQRMYSAHAVEKANELANVEKS
IYEHRDLLRQISSYNKRPRRDPQAVSCQRCINECLIECEQLIDKYAKLARPFSYNEKDET
GQAIDAGGEEEGDDEGVKRRPSYTPQLIKAKSAKCFDKRLKTLPELCDVTFYDATVTLLK
DTEKGFRGDLCYLHTQRLDKALRRKQRVTNFLFEEDLGDDDEEDERGTLRPFCAVNHAVD
NYTPLNPPHIVLGTEPLVLEDLEPPDPLNPGLTSETEPGLVESHLESSPSDQTLETQGSS
EGNKGSFSSDKSGLDLAEKQLNRAKSQAPDPDCKLTNEPDMERESSSEDLETTAGDDDGD
GTPVSLLEVASELEASREDECEVITDGASDILIPLDSACCMAQEGFLYEASPAERTPCVG
QSSNSQSPVVNQEPHALLPLQSDYTVGSPGSESPATGLELPVGLLGDAVSRTSLEEGSDC
TMSASTGSDRAASPLGYGGVVTLRQRKKAGQAALKFVRQYPFAMQALWCLLSGRTLVVLG
ADEGRVRRLVSALALFVPAPGKCGERVQAWLSCPFTLTDLQRWKLIGLQRVASPVGSSML
YSLSRYSRYISILDVDQKTLRCPPYRGQLLANIADHRTSIRRGSTFFLHLQSTLCEMAAK
AFLLTFTHHLHLPVSCTEGPEGVEGRRRCFLQEQLGLGHEDSQILLYLSQLVTQHYLHPA
TGGSAAATSFTFNYTTSVLYKI
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgataggctcacctgacgtggtggctttcactaaagaggatgatttcgggcaggcagat
cccgacccctgggccatccccgatgagttttctgtccctctatctccaatctctgactcc
aacccctgggctaaaacctcctacgccaagttcaccaaagacttcatcctcatctccgag
ttctccgagcaggtcggccctcagcctctcctcaccatccccgaagaccccaaagtctgc
ggcaccttcgacctcaactacttctccctgcgcatcatgtcggtggactaccaggcctcc
tttgtggggcatccgcccggcagcgggtacccgaggctcagctttgtggaggactccagg
gtggtgctgggagactcaaaggaaggagcgtttgcatacgtccatcacctcacgctttac
gacctggaggcgaggggcttcgtgcgaccgttctgcatggcgtacgtctcggctgacgag
aggaaaatcatgctgcagtttcaggagctttccctccgcttctctcaggcgtccgagtgt
ctgaaggctgggaacaggagggcgtttgccaaggagctccagaggaagctgcgggatctg
gagtacactcactcggtgctgcagagggaggagggtctgcagagagaggctgggactcag
cgcatgtactccgctcacgctgtggagaaagccaacgagctcgctaacgtggaaaaaagc
atctacgaacaccgagacctgctgagacagatcagctcctacaataaacgcccgcgccga
gaccctcaagccgtcagctgccagaggtgcatcaacgagtgcttgatcgaatgcgagcag
ctgatagacaaatatgcaaagctcgccaggccttttagctacaatgagaaagatgagacg
gggcaggccatcgatgctggaggtgaagaagaaggggatgatgaaggcgttaagcgaagg
ccgtcctacacgccacagctgatcaaagccaagtctgcaaagtgtttcgacaaacgcctg
aagaccctgccggagctgtgcgacgttactttctacgacgccaccgtgacgctcctgaag
gacacggagaagggtttccggggggatctttgctaccttcacacacaacgcctggacaag
gcactacgcaggaaacagagagttaccaacttcctgtttgaggaggacctcggggatgac
gatgaagaggatgaaagggggaccctgagaccattctgtgctgtgaaccatgctgtagat
aactatactcctttaaatccacctcatattgtgcttggaacagaacctctagtgttggag
gatctagagcctccggatcctctcaaccccggccttacttcagagaccgaacctgggctt
gtggagagccatctggagtcctccccttcagatcaaactctggagactcaagggagctca
gaagggaacaaaggaagcttcagcagcgataagagcggactggatctcgcagagaagcaa
ctgaatcgggctaaatcacaagctcctgatcctgattgtaaactgaccaatgaaccggac
atggagagggaaagcagcagcgaagatttggagacaaccgctggggatgatgatggagac
gggactcctgtgtcacttctggaggttgcgtccgagctggaggccagcagagaagacgag
tgtgaagtaataactgacggggcttcggatatattgattcctttggactctgcttgctgt
atggcccaggagggtttcctttacgaagcttctccagcagagagaactccttgtgttggc
caaagctccaactcgcaatccccagttgtcaaccaggagcctcatgcccttctccccctc
cagagcgactacacggtgggttccccgggctcagaaagccccgccaccggactggagttg
cctgttgggctcctcggagatgccgtttcccgaacctcattggaggaagggtcagactgt
accatgagtgcttctacagggtccgatcgggccgcttcacctcttggctacgggggagtt
gtgaccctgcgccagaggaagaaggccggacaagcagcgctgaagtttgtgcgacagtat
ccgtttgccatgcaggcgctgtggtgtctgctgagcggccgcacgctggtggtgctcggg
gccgacgaggggagggtccgccggctcgtttctgctctcgctctctttgtgccggcgccg
gggaaatgtggagagagagttcaagcctggctgtcctgtcccttcaccctcaccgacctg
cagaggtggaaactcattggcttacaaagagtggcgtcccctgtcggctccagcatgctt
tactctctgtcgcgctacagccgctacatctccatcctagacgtcgaccagaaaacgctg
cgctgtcctccgtaccgaggccagctgcttgccaacatcgccgaccatcgcacctccatc
cgccgcggctccaccttcttcctccacctgcagagcacgctgtgtgagatggcagccaag
gccttcctgttgaccttcacccaccacctgcacctccccgtcagctgcaccgaggggccg
gagggggtggagggccggcgccgctgcttcctgcaggaacagctgggtctggggcacgag
gacagccagatcctgctctacctcagccagctcgtcacgcagcactacctgcatcccgcc
accgggggcagcgcagcggcaaccagcttcaccttcaactacaccaccagcgttttatac
aaaatctga
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