Notothenia coriiceps (black rockcod): 104960421
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Entry
104960421 CDS
T04920
Symbol
dsel
Name
(RefSeq) dermatan-sulfate epimerase-like protein
KO
K01794
chondroitin-glucuronate 5-epimerase [EC:
5.1.3.19
]
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc00532
Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
ncc01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
104960421 (dsel)
Enzymes [BR:
ncc01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.19 chondroitin-glucuronate 5-epimerase
104960421 (dsel)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sulfotransfer_3
Sulfotransfer_1
DUF4962
Motif
Other DBs
NCBI-GeneID:
104960421
NCBI-ProteinID:
XP_010786768
UniProt:
A0A6I9PID1
LinkDB
All DBs
Position
Unknown
AA seq
1218 aa
AA seq
DB search
MYSHMPGNMAVNWVVYSVFLLPLFAVGTAFSGVFNATDRDIFTDDLLQVKLTEARATEQW
KLKSSDSHPNLYFNQVDVLHLRQRSSTTHSQIFKVIRAAALTMLSNVPYYMPPVKHAEFT
SKWNEIYGNNLPPLALYCLLCPEDSAALQFLIKFMDRMAEYPDWKVTSAPNDEVPTAHSL
TGFATAYDFVYSYLDERRRDFYLKKIRSETEELLEVSKHRGWGKQYLQNHQTTNILAVLI
GAIVVGSHNYPESMIWKQVAVNYMEKTMFLLNHVVDGSLDEGVAYGSYTAKSITQYVFLA
QKHFDIDNMQNNWLREHFWFYYATLLPGFQRTVGIADSNYNWFYGPESQLVFLDSFVMRN
GTGNWLAQQIRKHRPKDGPMGQSSAQRWATLHTEYIWYNSHLTPQPPHDFGKAKMHIFSN
WGVVTYGAGLPNGQGNTFVSFKSSKLGGRAVYDIVHDKPYSWVEGWNSFNPGHEHPDQNS
FTFAPNGQVFVSEALYGPKYSYLNNVLVFSPSPTSQCNSPWEGQLGECAKWLRWTDEGVG
DARGEVIVASSHRDTMFVSGEAALAYSPAMRLKSVFRALVLLNSQTLLVLDHVEKWSDSP
VKSLSAFFHNLDIDFKYVPFKFMDRYNGAMMDVWDAHYKMFWFDSQGHSPETRIQEAEQA
AEFKKRWTQYVNVTFPMTGTVSRVAYVLHGPYVKVSSCKFVDNSNNGVRLSLTLNNTETI
VSIATNYKDIGARRTYLGFGGHCKVEDINQITRYGLGTQLIPKQISADNQLFDFGFTVNV
IAGVVLCVAIGFLTIQRKFYVCFSRLMRYALLSVLILWIAELLFVSNSCDQLLCGVKWKG
AGAKSEVNKQIALYELHRLPLPTVVITTLPGSGSEILKHLFYNSSDFVYIRVPTEHLDIP
ETEFEFDSLVDACEWSRSDATHGRFKIIQGWLHSLVHNTKLHLQNIQLVEGSRVKQPQKG
GPSRDRKKRFRRREPASELKGKLRASLDRDAEYVREMRRHVVEYPNARVVLNMRSGSWAL
KLPFIQEVVGPSLRTIYLVRDPRAWIYLMVYNSKPSLYSLKNIPQHLSLIFKEDAVSDRC
PSSAPEFKIIQRLLSRSETNPILILAHLWLAHTAALLRVSESLPEESFLQVKFEDVVNFP
QETAESIHTFLGVPVSPAALNQLIFTTSTNLYNLIYEGDISPANINMWRQNMPRKDMGLI
EDVCGSVMRRLGYTRFAN
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgtattcacacatgcctggcaacatggcagtgaactgggttgtatattcagtttttttg
cttccactgttcgcagtggggacagctttctccggggtcttcaacgccacagacagagac
atttttacagatgacttgctgcaggtcaagctcacagaagccagagcgactgagcagtgg
aaactcaagtcgtctgattcccatcccaacctatattttaaccaagtggatgtgttgcac
ttgaggcaaaggtcctccaccacccacagtcaaatatttaaagtcatccgagcggctgcg
ctcacaatgttgtctaatgtcccctattacatgccccctgtgaaacatgcagagtttaca
agcaagtggaatgagatttatgggaacaacctgcctcccctggctctctactgcctgctg
tgcccggaggactctgctgccctgcagtttcttatcaagtttatggacaggatggctgaa
tacccggactggaaggtaaccagtgcccccaacgacgaggttcccactgcgcactctctc
actgggtttgctactgcttatgactttgtttactcttacctggatgaacgacggagggat
ttttacctcaagaaaattcgatcagagacagaggaactgcttgaggtgtcaaagcacagg
gggtgggggaaacagtacctccaaaatcatcaaaccactaacatattggctgtcctgatt
ggtgcaatagtggttggatcacataactacccagagtcaatgatctggaaacaagttgca
gtgaactacatggagaaaactatgtttctccttaaccatgttgttgatgggtcgctggat
gagggagtagcctatgggagctacacagccaagtccatcacacagtatgtcttcttagct
cagaaacatttcgacattgacaacatgcagaacaactggctgcgggaacacttttggttt
tattacgccactctcctgccggggtttcagagaacagttggcatagcagactccaactac
aactggttttatgggccggagagccagcttgttttcctcgactcatttgtcatgaggaac
gggacgggtaactggctggctcagcagattagaaagcaccgacccaaggatggtcccatg
gggcagtcgtctgcccagcgctgggctacacttcacacagaatacatctggtacaactcc
cacctcactccacagcctccacatgactttggaaaagctaagatgcatattttctcaaac
tggggcgtggttacctacggagcagggctaccaaatggccagggtaacacttttgtctcc
tttaagtctagcaagctgggtggccgtgcagtctatgacattgtccatgacaagccttac
tcttgggtagagggctggaacagctttaacccaggtcacgagcaccctgatcagaactct
ttcacttttgctcctaatggacaagtatttgtttctgaagcactttatggtccaaagtac
agctaccttaacaatgttttggtgttcagtccgtctcctaccagccaatgtaacagtccg
tgggagggtcagttgggggagtgcgccaagtggctgcgctggactgatgagggggtgggt
gatgccagaggagaggtgattgtcgcgtcctcacacagagacaccatgtttgtaagtggg
gaagcggcgttggcttattcccctgctatgagactgaagagtgtgttcagagctttagtt
ttgctaaactctcagactctgctggtgcttgatcacgtagaaaagtggagtgattcacct
gtaaagtccctcagtgcttttttccacaatcttgacattgactttaaatacgttcctttc
aaattcatggacagatataatggcgccatgatggatgtgtgggacgctcattataaaatg
ttctggttcgacagccagggtcacagccctgaaaccaggatacaagaggcagagcaggca
gctgagtttaaaaaaagatggactcagtatgtcaatgtcacttttccaatgacaggcacc
gtcagcagagtagcttacgtgttacacgggccatatgtcaaagtgtctagctgtaaattt
gtggataatagcaacaatggcgtgagactatctttaaccttaaataacacagagacgata
gtgtccattgctacaaactacaaagacataggggctaggaggacttatctgggatttgga
ggtcactgtaaagttgaggatataaatcaaatcactcgatatggccttgggactcaactt
atccctaaacaaatcagcgctgataatcagctatttgactttgggttcacagtcaatgta
atagcaggggttgttctctgtgtggccataggatttttgaccatacagagaaagttttat
gtctgcttcagcaggctgatgcgttacgccctcctctctgtgcttattctgtggatagcc
gagctgctgtttgtgtctaatagttgcgatcagcttctctgtggggttaaatggaaaggt
gcgggcgccaaaagtgaagtaaacaaacaaatcgcactgtacgagctgcaccggctcccc
ctacccaccgttgtcataacaacccttcccggatcggggtcagaaatactcaagcacctt
ttctacaacagctcagactttgtttacataagagttcccaccgagcacctggatattcct
gagacagagtttgagtttgactctttagtcgacgcctgtgagtggtcaaggtcagacgct
acgcacggacggttcaagattattcagggctggctgcattcgctggtccacaacactaag
ctgcacttgcagaatattcagttggtagagggcagtagggtcaaacagccccagaaaggt
ggcccctcaagggacaggaagaaaagatttaggaggagagagccagcgtctgagctaaaa
ggcaagctgagagcaagtctggacagagatgcagagtatgttagggagatgagacgccat
gttgtggagtaccctaacgcccgagtggtcctcaacatgcggagcgggagctgggcgctt
aaactccctttcattcaagaggtggtgggaccttccttgaggacaatttacttggtgaga
gaccctcgagcatggatttatctcatggtttataacagcaaacccagcctttactctctt
aaaaacatccctcagcacctttccttgatattcaaggaggatgctgtgagtgacaggtgc
ccatcttctgcgccagagtttaaaataatccagaggctcctgtcccgttctgagacaaac
cccatcctgatactggctcatctgtggctggctcacaccgcagcgctgctgagagtcagc
gagagcctccccgaggagtccttcctccaagtgaagtttgaggacgtggtcaacttcccg
caggagacggcggagagcatacacacatttctgggggtgcctgtgtcccccgcagccctc
aaccagcttatcttcaccacctccacaaacctttacaatctcatttatgagggggacatt
tcaccagccaacataaacatgtggagacagaatatgcctcggaaggacatgggactcata
gaagatgtgtgtgggagtgtgatgaggaggctgggttacaccaggtttgcaaattaa
DBGET
integrated database retrieval system
