Notothenia coriiceps (black rockcod): 104964660
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Entry
104964660 CDS
T04920
Name
(RefSeq) short transient receptor potential channel 3-like isoform X1
KO
K04969
transient receptor potential cation channel subfamily C member 6
Organism
ncc
Notothenia coriiceps (black rockcod)
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ncc04040
]
104964660
Ion channels [BR:
ncc04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
104964660
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRP_2
Ion_trans
PKD_channel
Ank_2
Ank_4
Ank
Ank_5
YVC1_C
DUF3837
Motif
Other DBs
NCBI-GeneID:
104964660
NCBI-ProteinID:
XP_010791803
UniProt:
A0A6I9PWE9
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Position
Unknown
AA seq
900 aa
AA seq
DB search
MNQDPPLWISSRMNHRPPLSSRPAVCSDSPRARSRDNLLVCEDFGEENCCSGRCLGHSSS
ERQLVAPLSAVKRRQALRGPTYMFSAPSISPSEVEQRFLEAAEYGNIPEVRRMLLHLPHL
NVNAVDYMGQNALQLAVSNEHLEVTELLLGRADLARVGDALLLAISKGYVRITEALLCHP
AFRDAHRLTGSPAQADMLDDFYAYDEDGTRFSHDVTPVILAAHCQEYEIVHTLLSKGAHI
DHPHDYFCGCDSCNYQQQFDSFSHSRSRINAYRGLASPAYLSLSNEDPVLAALELSSELA
MLANIEKEFKNDYCCLSTQCKDYVVGLLDLCRSTEEVEAILSGETDSEDNYDLPGRPSLT
RLKLAIKYELKKFVAHPNCQQQLLSIWYENLPGLRQQTTATKLLVVLAVAIGLPGLAVAY
LVAPCSRVGKVMRSPFMKFVAHASSFTIFLGLLIMNAADRFAGATLLANMTHHDLQGEHN
LNSDPLMLYRMTTSPFTWMEILIISWVMGMIWTEVKEIWSQGPGEYFVEPWNFLDFGMLA
IFLASFSCRLSTLRHADLAQTYVHTHYTTLINVTLPPEINYFTLARIYWVPSDPQLVSEG
LYAVAVVLSFSRIAYILPANESFGPLQISLGRTVKDIFKFMVIFILVFLAFMIGMFNLYS
YYLGAKQNDAFTTLEESFKTLFWAIFGLSEVKSVVINNGHKFIENIGYVLYGVYNVTMVI
VLLNMLIAMINSSFQEIEDDADVEWKFARAKLWFSYFEEGRTLPVPFNLVPSPKSMLGLA
TGIKSLLQLLQKYVAGHSEEKNETQLNQLGEVKSSGFDGSTSSSRYQKIMKRLIKRYIIK
AQADKESDEITEGELKEIKQDISSLRYELLEEKSQNTETLEGLLRRLAEISTPSATLPVS
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaccctccactgtggatctcctccaggatgaaccacagaccgcccctcagc
agccggccggcggtctgcagcgacagcccccgggcccgcagccgggataacctgctggtg
tgcgaggacttcggagaggaaaactgttgctctggacgatgccttggccacagcagctca
gagagacagctcgtggcccctctcagtgcagtgaaacgacgccaggcccttcgtggtcca
acctacatgttctctgctccctccatcagcccttcagaggttgagcagcgcttcctggag
gcggctgagtacggcaacataccagaggtgcggcgcatgctgctccacctgccacacttg
aacgtcaacgctgtggactacatgggccagaatgcattgcagctggctgtgtccaacgaa
catctggaggtgacggagctgctgctggggagggcggatctggccagagtgggtgacgcc
ctcctgttagccatcagtaaaggttacgttcgtatcacagaggccttgttgtgtcaccct
gcgtttagagatgcccatcgtctgacagggagccccgctcaagcagacatgttggacgac
ttctacgcttacgatgaggacgggacgaggttctctcatgacgtcactccagtgatcctt
gcagcgcactgccaagagtatgagattgttcacaccctgctgagtaaaggggctcacatc
gatcatcctcacgattacttctgcggctgcgactcctgtaactaccagcagcagtttgac
tccttcagtcactcacgatcgcggatcaatgcctacagaggcctcgccagccctgcctac
ctctccctgtccaacgaggacccggtgctggccgccctggagctcagcagcgaactggcc
atgctggctaacattgagaaagaattcaagaacgactactgttgtctgtccacccagtgt
aaggactatgtggtcggcctcctggatctgtgccgcagcactgaggaggtggaggccata
ctgagcggagaaactgactctgaagacaactacgatctaccaggtcgcccctccctcaca
cggctcaaattagccatcaaatacgaactcaaaaagtttgtggctcatcctaactgccag
cagcagctgctgagtatctggtatgagaatctgcccggcctgagacaacaaaccactgcc
accaaactgctggtggtgctggctgtggctataggactgcctggactggctgtggcttac
ctggtggctccgtgcagcagagtggggaaagtgatgcgtagccccttcatgaaatttgtg
gcccatgcctcatcttttactatttttctgggtcttctgatcatgaacgctgctgaccgt
tttgcaggcgccaccctgttggcaaatatgacccaccatgatctccaaggagaacacaat
cttaactctgacccgctgatgctctaccgcatgaccacctcacccttcacatggatggag
atcctcatcatttcatgggtcatgggtatgatctggactgaggtgaaggagatctggagt
caaggcccaggggagtatttcgttgaaccgtggaacttcctggactttgggatgctggcg
atcttcctcgcctccttcagctgccgcttatccaccctgagacatgctgacttagcccag
acctatgtacacacacactacacgacactgattaatgtcacactgccccccgagataaac
tactttacactggcacgtatatactgggtgccttcggatccccagctggtatcggagggt
ctgtacgcggtggctgtggtgctgagcttctctcggatcgcttacatcctaccggccaat
gagagcttcggtccactgcagatctctctggggaggacagtcaaggacatcttcaagttc
atggtcatcttcatcctggtctttctggcgttcatgattggcatgttcaacctgtactcc
tattaccttggggcaaagcagaatgatgccttcaccaccctggaggagagtttcaagacg
ttgttctgggctatttttggactgtctgaggtcaaatctgtcgtgatcaataacgggcac
aaattcatcgagaacattggttacgtgctgtacggggtttacaacgttaccatggtgata
gtgctgctcaacatgctcatcgccatgatcaacagctccttccaggagatcgaggatgat
gctgatgttgagtggaagtttgctcgggccaaactctggttctcttactttgaggaggga
aggacgctcccagtacctttcaacctggtccccagtccaaagtccatgctgggactggct
acaggcatcaagtccctgctgcagctgctccagaagtatgtggcaggacacagtgaggag
aaaaatgagacacagttaaatcagctcggagaagtcaaaagttctggatttgatggatca
actagctcatccagatatcagaagatcatgaagcgtctgataaagcgttatatcatcaaa
gcccaagcagacaaagagagtgacgagatcactgaaggcgagcttaaagagatcaagcag
gacatctccagtctgcggtatgagctgctggaggagaaatcacaaaacacagagacactg
gaaggtctgctgaggaggctcgcagagatcagcacaccttcagcaacactgccagtatcc
tag
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