Notothenia coriiceps (black rockcod): 104965701
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Entry
104965701 CDS
T04920
Symbol
pdgfrb
Name
(RefSeq) platelet-derived growth factor receptor beta
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc04010
MAPK signaling pathway
ncc04020
Calcium signaling pathway
ncc04510
Focal adhesion
ncc04518
Integrin signaling
ncc04540
Gap junction
ncc04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
104965701 (pdgfrb)
04020 Calcium signaling pathway
104965701 (pdgfrb)
09133 Signaling molecules and interaction
04518 Integrin signaling
104965701 (pdgfrb)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104965701 (pdgfrb)
04540 Gap junction
104965701 (pdgfrb)
09142 Cell motility
04810 Regulation of actin cytoskeleton
104965701 (pdgfrb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ncc01001
]
104965701 (pdgfrb)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
ncc04090
]
104965701 (pdgfrb)
Enzymes [BR:
ncc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
104965701 (pdgfrb)
Protein kinases [BR:
ncc01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
104965701 (pdgfrb)
CD molecules [BR:
ncc04090
]
Proteins
104965701 (pdgfrb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_PDGFR_d4
Pkinase
Ig_3
I-set
Ig_2
ig
C2-set_2
Adeno_E3_CR1
V-set
RIFIN
VEGFR-1-like_Ig-like
Zwei_Ig_N
Ig_VEGFR-1-like_5th
ICAM_N
Haspin_kinase
Adeno_E3_CR2
Motif
Other DBs
NCBI-GeneID:
104965701
NCBI-ProteinID:
XP_010793009
UniProt:
A0A6I9PPT7
LinkDB
All DBs
Position
Unknown
AA seq
1101 aa
AA seq
DB search
MRRVTASRLHLTVTVTALLYFCTALRCVEISPDDKELTLAEGSFLSLTCSSSGETTWEFK
RDDVPYCQVEPVQNGGPSYQIVQSNSTSSILSLLNMSWKHTGVYLCVDRHTKETKEVAVF
VPDPKVWFIERSHGMVTKTSEESTVPCVVSNPDINVTLYERDTDQPIRGVYVPSEGYKAP
LEERTYVCRGEMNGEVMESQAFYVYSVIVPEAFDVYINASNTILKQGEPLTVNCTVHGVE
IADFSWDMPNSEDVEPLTDFLPNMKMRSFLIFPHATVANSGNYVCRVHEPVQDQTASGSV
NITVLEQGFVDVKAARKQNISARLQENVELRVEIEAYPPPQVRWSKDGATIKGHKPITTR
QEHEIRYVTILTLVRVRTEQKGLYSVLVTNGDDTKEVTFDLEVQVPSQIKDLTDHHLPGK
KHLVTCVAEGVPVPSIQWYSCDSMHKCSNQTEVWQPLIAEPEVVSIRTNVSYSETRKTSQ
VRSQVTFHKPQQVTVRCETSNRAGLLDRRDVKLVSNTLYSQVAVLAAVLALVVIIIISII
ILVAVWRKKPRYEIRWKVIESVSQEGHEYIYVDPIHLPYDLAWEMPRDNLVLGRTLGSGA
FGRVVEATAYGLTHSQSSTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNIVNLLGA
CTKQGPLYLVTEYCRYGDLVDYLHRNKHSLLQNYAEKNQDESCLISGGSTPLSQRKGYVS
FGSESDGGYMDMSKDEPSIYMPMQEHMDTIKYADIQPSPYESPYQQDIYQEQGGSRLDLF
ISDSSALTYDDLLGFSYQVAKGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDI
MHDSNYISKGSTFLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFSLGGTPYPDLPMNE
LFYSALKRGYRMSKPAHASDEVYEIMKKCWDEKFESRPEFSFLVQSVGNMLTDSYKKKYN
QVNDIFMKSDHPAVTRTKPRLSSPFPIANPAFGSPPPHYVPPDPYTQSPSPGEFREEADT
QEVVTAYNEYIIPIPDPKPDDVFTDVTSESPASSLALEEETDSMSQDTADTLPEEDRPED
TSERDALLGCSGTPEVEDSFL
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgaggagggtgacggcatccaggcttcatctgacggtcacagtgacagctctcctgtat
ttctgcaccgcgctgcgctgtgtagagatctcacccgatgacaaagagctcaccttggct
gaaggctcctttctcagcctcacctgctccagctcaggggaaaccacctgggagttcaag
agggacgatgtgccgtactgccaagtggaaccagttcaaaatggtggtcctagctaccaa
attgtgcaaagcaacagcacatccagtattttgagcttgttgaacatgagctggaagcac
acgggggtgtatctgtgtgttgaccgacacactaaagaaactaaggaggtggctgttttt
gttccagaccccaaggtgtggttcatagagcgctcccacggcatggttacaaagaccagt
gaggagagcaccgtcccctgtgtggtgagcaatcctgacatcaacgtcaccctgtatgag
agggacactgatcagcccatcaggggggtgtatgtccccagtgaggggtacaaggcaccg
ctggaggaacggacatatgtgtgtcgtggagagatgaacggggaggtgatggagtctcag
gccttctacgtctacagcgttatcgtcccagaggccttcgacgtctacatcaatgcgtcg
aacaccatcctgaagcagggcgaaccgctgactgtgaactgcacagtgcacggagtggag
atagcagatttctcctgggatatgcccaatagtgaggacgtcgagcctctgacagacttc
ctgcccaacatgaaaatgcgctccttcctgatcttccctcacgccacggtggccaacagc
ggaaactacgtgtgccgtgtccacgagcctgtccaagaccagactgcctctggcagcgtc
aacatcactgtgctcgagcaaggttttgtggacgtgaaggcggctcggaaacaaaacatt
tcagcccggctgcaggagaacgtggagctgagggtggagattgaagcctaccctccccct
caggtccgctggagcaaagacggggccaccatcaagggacacaaacccatcacaaccaga
caagagcatgagatcaggtatgtcactattctaaccttggtaagggtgaggacggagcag
aagggcctctacagcgtcctggtcacaaacggagatgacacaaaggaagtgacgttcgac
ctggaggtacaagttccctctcagattaaagacctgacggaccaccacctccctggaaag
aaacacttggtgacctgtgtcgctgagggggtcccggtcccgagcatccagtggtacagc
tgtgacagcatgcacaagtgtagcaaccagacggaggtgtggcagcctctgatagcagag
ccggaggtggtgagcatccggaccaacgtgagctacagcgaaactcgtaaaacaagccag
gtgcggagccaggtgaccttccacaagccccagcaggtgacggtgcgatgcgagaccagc
aaccgggccggactcctcgacagaagagacgtcaaactggtgtccaacacgctgtactcc
caggtggcagtgttggctgctgttctggccttagtggtcatcattatcatatccatcatc
atcctcgttgctgtatggaggaagaaacctcgctatgagatcagatggaaagtgatagag
tctgtgagccaggaagggcacgagtacatctacgtggatcccatccacctgccttatgac
ctggcctgggagatgccgcgagacaacctggtgctgggtcgcactcttggatcaggagcc
tttggcagggtggtcgaggcaactgcgtacggtctcactcattcccagtccagcacaaag
gttgcggtgaaaatgttgaaatctacagccaggaggagtgagactcaggctctgatgtca
gagttgaagataatgagtcacctgggcccacacctcaacatcgtgaatttgctgggagct
tgcaccaaacaaggcccattgtatctggtgacagagtactgtcgttatggcgacctggtg
gactacctgcacaggaacaagcacagcctgctgcagaactacgccgagaagaaccaggac
gaaagctgcctcatctccgggggaagcactccactcagccagaggaaaggctatgtgtcc
tttgggagtgagagtgacggaggatacatggacatgagtaaagatgagccctccatctac
atgcccatgcaggagcatatggacaccatcaagtatgcagacatccaaccctctccatac
gagtctccctaccagcaagacatctatcaggaacaaggtggcagcagattggacctgttc
atcagtgactcttctgccctcacatatgacgatctgttgggcttcagctaccaagtcgcc
aaggggatggagttcctcgcctccaagaattgcgtccatcgtgacctcgctgccaggaat
gtgttgatttgtgaggggaaactggtgaagatctgcgacttcggcctggcgcgagacatc
atgcatgattccaactacatctctaaaggcagcaccttcctgcccctgaagtggatggca
ccagaaagcattttccataatttgtataccaccctgagcgacgtgtggtcgtacggcatc
cttctttgggagattttctctttgggaggaaccccctaccctgatctgcccatgaatgag
ttgttctacagcgctttgaagagaggctaccgaatgtccaaacctgcacacgcctccgat
gaagtttatgaaatcatgaagaagtgctgggacgagaagtttgaaagtaggcctgagttc
tcctttctggtccaaagtgttgggaatatgctgaccgacagctacaaaaagaaatacaac
caagtcaatgacatcttcatgaagagtgaccatccagcagtcacccgcaccaaacccagg
ctctcctcaccctttccgatcgccaacccagctttcgggtccccacccccgcactacgtc
cccccggacccctacacccagagcccgagccccggagaattcagagaagaggcagacaca
caggaagtcgtaactgcatacaacgaatacatcatccccatcccagaccccaagcccgac
gacgttttcactgatgtcacatcagaaagccctgcaagctctctggctctggaggaggag
actgactccatgtcgcaggacacggctgacactctcccagaagaggaccggccggaggac
accagcgagagagacgctctgctgggctgctccgggacgcccgaggtagaagacagcttc
ttgtag
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