Notothenia coriiceps (black rockcod): 104967610
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Entry
104967610 CDS
T04920
Symbol
brca1
Name
(RefSeq) breast cancer type 1 susceptibility protein
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03440
Homologous recombination
ncc03460
Fanconi anemia pathway
ncc04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104967610 (brca1)
09124 Replication and repair
03440 Homologous recombination
104967610 (brca1)
03460 Fanconi anemia pathway
104967610 (brca1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ncc01009
]
104967610 (brca1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ncc04121
]
104967610 (brca1)
03036 Chromosome and associated proteins [BR:
ncc03036
]
104967610 (brca1)
03400 DNA repair and recombination proteins [BR:
ncc03400
]
104967610 (brca1)
Enzymes [BR:
ncc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104967610 (brca1)
Protein phosphatases and associated proteins [BR:
ncc01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
104967610 (brca1)
Ubiquitin system [BR:
ncc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104967610 (brca1)
Multi subunit type E3
BRCC complex
104967610 (brca1)
Chromosome and associated proteins [BR:
ncc03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
104967610 (brca1)
DNA repair and recombination proteins [BR:
ncc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
104967610 (brca1)
BRCA1-A complex
104967610 (brca1)
BRCA1-B complex
104967610 (brca1)
BRCA1-C complex
104967610 (brca1)
BRCA complex
104967610 (brca1)
FA (Fanconi anemia) pathway
Downstream FA components
104967610 (brca1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-C3HC4
RTT107_BRCT_5
zf-C3HC4_2
zf-RING_2
zf-C3HC4_3
zf-RING_UBOX
zf-C3HC4_4
RING_XB3-XBAT31
zf-RING_5
zf-Nse
PTCB-BRCT
zf-rbx1
zf-RING_10
TRAF3_RING
Motif
Other DBs
NCBI-GeneID:
104967610
NCBI-ProteinID:
XP_010795418
UniProt:
A0A6I9Q5G8
LinkDB
All DBs
Position
Unknown
AA seq
1410 aa
AA seq
DB search
METPLAPDVKKGISVLWETLQCPICLELMTAPVSTKCDHQFCKCCMMKLLDNTIPSRASC
PVCKTKITRRSLQESPGFQRLVSGLQSMIQAYENDTGINYFTGMCQEKGKPGVSAAEATK
HCHDNPFEETPDNEENVDNDDLSRSPSSTIAAQNGFARLMGLEDTSPLTTENEGLDSGLG
EAPPMSDKKTHSPPDNVEAIETEMSDVVEKATSRHKTRGKIKASFQPPLITDETKDQPLK
KSLRKKQNTDLDPDKILEEKQKKSLEKVAEWLMKVPTEGSLELEKPNKNSDDYESCSSSP
TINVKQHNILMNPTREDRAKILNEQVFGAVYKRERKGNKNSPPALHVEPQTTKETQNNSY
ADIVKKTSTEDKHGSDLEEEQQRMDQVIDTSSDIFKEAEKMDVMLENDTDKHGDDFDSLP
ESKKQHGKDEVPCPPSDIEPLQPKRKLKRRTRSSLQQVDIDLQKQAEEHSESTEQKKTDK
KKGKNTRSENGKPARVPKPLVLVGVQNGETSPIAKRRSEEVQVHIENYPSSEEQEIPVKR
SNRRSRRLQLFAEEVQEGHKKANWRANKAEKKSIVAKQSEEAKDGELNDMPSPKNESMTK
VAEQNGCIYGDDLGGVENMESGERPTPNAPDSIVEVPNTDTWSEASSACNVAVVPSSTSP
HEHTVVPPTLEPHNPANHLPNNTRLETLTNQTKCAGAENEEDNNDSDLDTEQLLKSFKAT
KRKSFNLCSSNVKRTRGFDQENVQVSEEKDSKCVGSGVESVNNQMYTKESERTNQEALRD
NETSSCCDFISPSISPSRTQKPVEKADQVVVEASIPDSGCSGQDSSFSTNNVSSALTPNK
VSKRKIESPNLSPVPRVVDSRLRFTAAEHDELDEPSKYSQITEKQLDAGKGMEIRDMCNA
NAGGTHSVNTAEHFVNTEFSLTPSGLRDNCGSVELSAHSSLKSKPNKKRKRAQRLESSSE
SDRSEEGLPTLAEIFGTSASRSAVTKDQGDSGEARCEGVTVPGAQQMSRPPASHSPDCVP
TSQCSVDLFGTPDECDVPVNDVGTSQFESSQFSSEVLVTQQKIEMQNDLVRLKKLMALVT
KELQEKEDSPAKEDPSKTDQSSKTTGQDTNRSPSCNKVTGPGSEQEAVQEVEREPSTRPP
DGEGVAEPGVSETEVQRSTHTGPGAKGSGDSKTSSSSPASRPLGSPSDGQEDKENNTPPK
DRIKAKMVLASSGLAPNEQTMVKKFAKRVGGRVVSQVTPEVTHVIMHTDEQLVCERTLKY
FLGIAGRKWVVSFQWISECFKLKKVLDESAFEVGGDVVNGPDHQGPMRARTTEDSSLLMK
GFKICFQGSFTDMTTDEMEWMVELCGAAVVKEPLLLDSKQSHQLVIIQPGSESSSSTYGS
LSKQATVVTRGWLLDTVATYTLQNFNKYKT
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
atggaaacccctctggcccctgatgtcaaaaaggggatttcagtcctttgggagaccttg
caatgtcccatatgcttggagttaatgactgcacctgtgtctaccaagtgtgaccatcag
ttttgcaaatgttgtatgatgaagcttttggacaacaccataccaagcagggctagctgt
ccagtgtgtaaaaccaagataaccagaaggagcttgcaggagagccctgggtttcagaga
cttgtttcaggattgcagagcatgattcaggcgtatgaaaatgacacgggcatcaactac
tttactggtatgtgccaggaaaaaggaaaaccaggagtctcggctgctgaagctactaaa
cattgtcatgataatccatttgaggaaacaccagacaacgaagaaaatgttgacaatgat
gatctgtcaaggtctccctcttcaactatagcagcccagaatggatttgcacgactgatg
ggacttgaagacacaagtcctttaacgacagaaaacgaaggcttggacagtggtcttgga
gaggccccaccaatgtctgacaagaaaacgcacagccctccagataatgtggaagcaatt
gaaacagaaatgtcagacgttgtggaaaaggcaacatcaagacacaaaacaagaggcaaa
ataaaagcctcctttcaaccaccattaataacagatgagaccaaagaccaacctttaaaa
aagtccttaaggaaaaagcagaacacggatttggatcctgacaagatccttgaggagaaa
cagaaaaaaagtctagagaaagttgctgagtggctcatgaaagttccaactgaaggaagt
ctggagttagagaaacccaacaaaaactcagacgattatgagagctgttcttcatctcca
acaataaatgtcaaacaacataacatcttgatgaatcctaccagagaggaccgtgctaaa
attctcaatgagcaggtgtttggggccgtctacaaacgagaaagaaaaggaaacaagaac
agccctccagctctacatgtcgaaccacaaacaaccaaggaaacacaaaataactcttat
gctgatattgtcaagaaaacaagcactgaagataaacatggcagcgatttggaggaagag
caacaacggatggaccaggttattgataccagtagtgacatttttaaagaagcagaaaag
atggatgtcatgctggaaaatgacacggacaaacacggagacgattttgacagcttgcca
gaaagtaagaaacaacatggcaaagatgaggttccttgccctccgtctgatattgaacca
ctacaaccgaaaagaaagttgaagagaaggacacgcagctctctgcagcaggtcgacatc
gatttgcagaagcaagccgaggaacattcagaaagtaccgagcaaaagaaaactgacaag
aagaaaggtaaaaacacgaggtcagaaaatggcaaaccggctagagtgccgaaacccctt
gttctggtcggagttcaaaatggagaaaccagtcctatagctaaacggaggtcagaagaa
gttcaagtacatattgaaaattacccaagcagcgaggagcaagaaatccctgtcaagagg
agcaataggagaagtagaagacttcaactctttgctgaggaagtccaggaaggtcacaag
aaagcaaactggagagccaataaagctgaaaaaaaaagcattgttgcaaagcaatctgag
gaagctaaagatggagagttaaatgatatgccatcacctaagaatgaaagcatgacaaag
gtggctgaacaaaatggatgcatttatggtgatgatttaggaggagtagaaaacatggag
tctggtgagagaccaacaccaaatgctccagattccattgtcgaagtaccaaacactgac
acttggtctgaagctagttctgcttgtaatgtcgctgtggtcccgagctctacgagtcca
catgaacacactgtggtacctccaacacttgaaccccacaatccagcaaatcatctccct
aacaacactcgcttggaaaccttgactaaccagacaaaatgtgctggagctgaaaatgag
gaagataacaatgacagtgacctggacacggagcaactgctcaagagcttcaaagccact
aaaaggaaatctttcaatctttgcagctcaaatgtaaaaaggacccggggcttcgaccaa
gaaaacgtgcaggtatccgaagaaaaggatagcaagtgtgttggttctggtgttgaatct
gtaaataatcagatgtacacaaaggaatctgaaaggacaaaccaagaagcattaagagac
aatgaaacctcatcttgctgtgatttcatatccccttccatctcaccttcccgaacacaa
aaaccagttgagaaagctgatcaagtggtggtagaagcctccatccctgatagcggttgt
tcaggtcaggatagctctttctccacgaataatgtcagcagcgccctcactcccaataaa
gtgtcaaaacgcaaaatagaaagtcctaatctctcccctgtgcctcgtgtagtagattcg
cggctccgcttcacagccgctgaacatgacgagttagatgaaccctcaaagtattctcag
atcacagagaagcagcttgatgctggcaaagggatggagataagagacatgtgcaatgca
aatgccggtggaacacattcagtcaacactgctgaacatttcgtaaacacagagttctct
ttgactcccagcggcctccgtgacaactgtggtagcgtagagctgagcgcccattcctcc
ctcaagagcaaacccaacaagaagaggaagagggcccagaggctcgagtcttcctcagag
tcagatcgcagtgaagagggattaccaactttggcagagattttcggaacatcagcttct
cgctctgctgtgacaaaggaccagggagactccggagaagctagatgtgagggtgttaca
gttcctggagcacaacagatgagccgtccacctgcaagccacagccccgactgtgttcct
accagccaatgctctgtggacctgtttggcacacctgatgaatgtgatgtcccagtgaat
gatgtcggcacttcacaatttgaatcatcacaattttcaagcgaagttcttgtcacacag
caaaagatagaaatgcaaaatgatctggtgaggttgaagaagttgatggctctggtgacc
aaggagcttcaggagaaagaagacagtcctgcaaaagaagacccctcaaaaacagatcag
agcagcaaaaccacaggccaagacacaaacagatccccatcgtgcaacaaggtcacaggc
ccaggttcagagcaggaagctgttcaagaagtagagcgagagcccagcacaagaccacct
gatggagaaggggtcgccgagcccggtgtgtcagagacggaagtgcagcgctccacacac
acagggccgggtgcaaaaggctccggagactccaagacttccagttcaagtccagcatcc
agaccattaggttcaccatcagatgggcaagaagacaaagaaaacaacactcctccgaaa
gacagaatcaaagctaagatggtgctagcctcatctggattagcccccaatgaacagaca
atggtgaaaaagtttgccaagagagttggtggccgagtggtttcccaggttaccccggag
gtgactcatgttataatgcacacagatgaacaactggtatgtgagcgcacgctgaagtac
ttccttggcatcgcaggcaggaagtgggtggtgagcttccagtggatttcagagtgcttc
aaactaaagaaagtcttggatgagagtgcctttgaagttggaggtgatgtggtgaatgga
cccgaccatcagggccccatgagagctcgaaccactgaagacagtagcttactcatgaag
ggcttcaagatctgcttccaaggatctttcacagacatgacgacagatgaaatggagtgg
atggtggagctctgtggagcagctgtagtcaaagagccacttctcctcgacagtaaacag
tcccatcagcttgtcatcatacagcctggatctgagtcgtcttcgtccacatacggcagt
ctgtctaaacaagctaccgtcgtgactcgtggttggctgttggataccgtggcgacctac
accctccaaaacttcaataagtacaaaacatga
DBGET
integrated database retrieval system
