Natranaerofaba carboxydovora: ACONDI_02127
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Entry
ACONDI_02127 CDS
T07970
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ncd
Natranaerofaba carboxydovora
Pathway
ncd03030
DNA replication
ncd03410
Base excision repair
ncd03420
Nucleotide excision repair
ncd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ncd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACONDI_02127 (ligA)
03410 Base excision repair
ACONDI_02127 (ligA)
03420 Nucleotide excision repair
ACONDI_02127 (ligA)
03430 Mismatch repair
ACONDI_02127 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ncd03032
]
ACONDI_02127 (ligA)
03400 DNA repair and recombination proteins [BR:
ncd03400
]
ACONDI_02127 (ligA)
Enzymes [BR:
ncd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACONDI_02127 (ligA)
DNA replication proteins [BR:
ncd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACONDI_02127 (ligA)
DNA repair and recombination proteins [BR:
ncd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACONDI_02127 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACONDI_02127 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACONDI_02127 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACONDI_02127 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
RNA_pol_A_CTD
RNA_ligase
PTCB-BRCT
HHH
5_3_exonuc
HHH_3
BRCT_2
HHH_8
AphA_like
DivIVA
Motif
Other DBs
NCBI-ProteinID:
UMZ74533
LinkDB
All DBs
Position
complement(2228346..2230382)
Genome browser
AA seq
678 aa
AA seq
DB search
MDEKQAKKKIQELKKTIEYHNHKYYVLDSPEIDDKEYDRLMKELIELEENYPSLKTPDSP
SQRVGGEPLDEFSRVRHTVPMLSLANAENEQELREFDNRLRRLIGDDRSFSYVCELKIDG
LAVSLVYENGVFVRGATRGDGLVGEDITNNLKTVRSIPLSLNSSYNLEVRGEVFMPKGAF
YKLNEEKEKKGEEPFANPRNAAAGSLRQLDPKIAAKRELDIFLYSVPYIDIEENIEKKEF
QSHYETLEFIKSIGFKVNPYIEKFSTIEGVVDYCTGFLERKPELQYDIDGIVIKVDEISI
QNELGTTAKSPRWAIAYKFPAEKKVTQVQNIIINVGRTGALTPVAFLEPVNVAGSVVKRA
SLHNEDILNEKGIKIGDFVEIQKAGDIIPEIVRVIEEKRTGEEKDFVYPKECPVCKTEAV
RLEDEAILRCINPSCPAQTVEKIIHFVSRDAMDVEGLGDKLVEKLYNEGLIKDVADLYYL
SKDDIAGLSGFGEKSAENLINAIEESKSRPLTNLIFALGIRFVGKKAAGLLAKKYRTIDK
LLDAKEEDIAEIPGMGEKIADSIVKFLSDENSLSLINKLKEAGVNMEETQEDEGEDRSFE
GSIFNGKSVVLTGKVEGYSREEVKKILDRLGADVKNSVSRNTDIVIAGEDAGSKVDKARE
LGVEIMSGEEFLDKVGYL
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
ttggatgaaaaacaagctaaaaagaaaattcaagaactaaaaaagacaattgaatatcac
aatcataaatactacgtactagattccccggaaattgatgataaagaatatgacaggctg
atgaaggagcttatagaacttgaagaaaactatccttcattaaaaacaccagactctcct
agtcaaagggttggaggagaaccattagacgaattctcccgggtgcgtcatactgttcct
atgcttagtctagctaatgctgagaatgaacaggagcttagagagtttgataacagattg
agacgtctaataggtgatgataggtcattttcttatgtttgtgagctaaaaattgatgga
cttgctgtatctttggtatatgagaatggtgtttttgttagaggggctaccaggggagat
ggcttagttggagaggatatcactaataacttaaaaacagttagatctattcctctaagt
ttaaacagcagttataacctggaagttagaggcgaagtgtttatgccaaagggtgctttt
tataaacttaatgaagagaaagaaaaaaaaggcgaagaaccttttgccaaccctagaaat
gctgctgctggctcactgcgacagcttgatcccaagatagctgccaaaagggagttagat
atctttttatattctgtaccttatatcgatattgaagaaaatattgaaaaaaaagagttt
cagagtcactatgaaactctagagtttatcaaaagtattggttttaaggttaatccatat
attgaaaagttttcaactatagaaggggtcgttgattattgtactggttttttggagaga
aaacctgaattacaatatgatattgatggaattgtgataaaggtagatgagatttcaata
cagaatgaacttggtacaactgcaaaaagtcccaggtgggctatagcatacaaatttcct
gctgaaaagaaagttacccaagttcaaaatattataataaatgtaggtagaactggagcc
cttacccctgtggcttttttggagccagtaaatgttgcaggctcggtagttaagagagca
agtttacataatgaagacatattgaatgaaaagggtataaaaattggggattttgtagaa
atacaaaaggcaggggatattataccggaaatagtaagggttatagaagaaaaaagaact
ggagaagaaaaagattttgtctaccctaaagaatgtccagtctgtaaaactgaagctgtg
agattagaagatgaagcaatacttcgctgtatcaacccttcatgccctgcccaaacagta
gaaaagataattcattttgtttctagagatgcaatggatgttgaagggttaggtgacaaa
ttagtagaaaaactatataacgaaggattaattaaagacgttgcagatctctattatctt
tcaaaagatgatatagctggtctgtcaggatttggcgaaaaatctgctgagaacttaata
aatgcaattgaagaaagtaaaagccgcccccttactaatctaattttcgctctggggata
agatttgtaggtaagaaagcagcaggccttttggcaaagaagtatcgcactattgataag
cttctagacgctaaagaagaagatatcgcagaaatccccggtatgggagaaaaaatagca
gacagcatagttaagtttttaagtgatgagaactcattaagtttaatcaataagttaaaa
gaagcaggagttaatatggaagaaacgcaagaagatgaaggtgaggatagaagttttgaa
ggtagtatttttaatggcaaaagcgttgtattgacaggaaaagtagaaggatactcaagg
gaagaggttaaaaaaatccttgacaggcttggtgctgatgttaaaaatagtgttagcagg
aatacagacattgtaatagcaggtgaagatgcaggttcaaaggttgataaagcaagagag
cttggggtagagattatgagtggggaggaattcttagataaggtaggctatttgtag
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