Nocardiopsis changdeensis: KGD84_26780
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Entry
KGD84_26780 CDS
T08932
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ncg
Nocardiopsis changdeensis
Pathway
ncg03030
DNA replication
ncg03410
Base excision repair
ncg03420
Nucleotide excision repair
ncg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ncg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KGD84_26780 (ligA)
03410 Base excision repair
KGD84_26780 (ligA)
03420 Nucleotide excision repair
KGD84_26780 (ligA)
03430 Mismatch repair
KGD84_26780 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ncg03032
]
KGD84_26780 (ligA)
03400 DNA repair and recombination proteins [BR:
ncg03400
]
KGD84_26780 (ligA)
Enzymes [BR:
ncg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KGD84_26780 (ligA)
DNA replication proteins [BR:
ncg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KGD84_26780 (ligA)
DNA repair and recombination proteins [BR:
ncg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KGD84_26780 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KGD84_26780 (ligA)
MMR (mismatch excision repair)
DNA ligase
KGD84_26780 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KGD84_26780 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
HHH_3
HHH_8
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QUX21933
UniProt:
A0ABX8BKB7
LinkDB
All DBs
Position
complement(6008321..6010615)
Genome browser
AA seq
764 aa
AA seq
DB search
MAPENSTEIPDEARNRHEELSRELDDHSYRYYLGNPVISDAEYDALMGELRGIEEEHPQL
ITQDSPTQKVGAPISVDFAAVEHLVRMESLGNAFDFDELNAWADRASAEVPVGAYLCELK
IDGLAVDLVYEKGRLVRAATRGDGRVGEDITLNIRTIDVVPEQLDESVRPAPELLEVRGE
VFLPVEAFEALNRRITETGEHTPFANPRNAAAGSLRQKDPRVTATRPLSMIVHGVGAYTP
AQGSEDVRFTSQSQAYALLGEWGLPLSDRYKVVSTMDEVRAYVAHYQEHRHEPAYEIDGI
VIKVDDFALQRRLGSTSRAPRWAIAYKYPPEEVTTKLVDIKVGVGRTGRVTPYGVMEPVF
VAGSEVEFATLHNAQEVERKGVLIGDTVVLRKAGDVIPEIVGPVVEKRDGGERPFVMPEK
CPECGTPLGQQKEGDVDLRCPNARSCPGQLRERVYFVAGRKALDIEALGYVAATALTQPL
EPADAPLKDEGDLFDLTVEQLLPIRTHVLDPDTSEPKTDPKTGEPKVVSFFANLKGEPKK
TVEKLFEQLEIAKSRPLWRVLVALSIRHVGPRAAEDLARHFRSMDAIRAASEEELAAVDG
IGPTIARSIREWFEVDWHREIVAKWAAAGVRMEDEVDEALSGVLDGVTVVVTGSLEGFTR
DGAKESIAERGGRATASVSKKTGFVVVGDSPGSKYDKAVKLGVPILDEQGFRVLLEAGPE
AAEKVRINPPEEEPGDGDAAGAEAGAEKAGDGSGAAAEEAPAQE
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcccgagaacagcaccgagatccccgacgaggcgcgcaaccggcacgaggagctc
tcccgggagctggacgaccacagctaccgctactacctgggcaaccccgtcatctccgac
gccgagtacgacgccctcatgggcgagctgcgcggcatcgaggaggagcacccgcagctc
atcacccaggactcgcccacccagaaggtcggcgcgccgatcagcgtcgacttcgccgcg
gtcgagcacctggtgcggatggagagcctgggcaacgccttcgacttcgacgagctgaac
gcctgggcggaccgcgcctcggcggaggtgcccgtgggcgcctacctgtgcgagctgaag
atcgacggcctggccgtggacctggtctacgagaagggccgcctggtgcgcgccgccacc
cgcggcgacggccgggtgggcgaggacatcaccctcaacatccgcaccatcgacgtcgtg
cccgagcagctcgacgagagcgtgcgcccggcgcccgagctgctggaggtgcgcggcgag
gtgttcctgccggtggaggcgttcgaggcgctcaaccggcgcatcaccgagaccggcgag
cacacccccttcgccaacccgcgcaacgccgcggccggctcgctgcggcagaaggacccg
cgggtcaccgccacccggccgctgtcgatgatcgtgcacggcgtgggcgcctacaccccg
gcgcagggctcggaggacgtgcggttcacgagccagtcgcaggcgtacgccctgctgggg
gagtgggggctgccgctcagcgaccgctacaaggtcgtgtccaccatggacgaggtgcgc
gcctacgtcgcccactaccaggagcaccggcacgagcccgcctacgagatcgacggcatc
gtcatcaaggtggacgacttcgccctccagcggcggctggggtcgaccagccgcgccccg
cgctgggcgatcgcgtacaagtacccgccggaggaggtcaccaccaagctggtggacatc
aaggtcggtgtgggccgcaccggccgggtcaccccctacggcgtgatggagccggtgttc
gtcgccgggtccgaggtggagttcgccaccctgcacaacgcccaggaggtcgagcgcaag
ggcgtgctcatcggcgacacggtggtgctgcgcaaggcgggcgacgtcatccccgagatc
gtcgggccggtggtggagaaacgcgacggcggcgagcggccgttcgtcatgccggagaag
tgccccgagtgcgggacgccgctgggccagcagaaggagggcgacgtcgacctgcgctgc
cccaacgcccggtcctgccccggacagctgcgcgagcgggtgtacttcgtggccggccgc
aaggccctggacatcgaggcgctcgggtacgtggcggccaccgcgctgacccagccgctg
gagcccgccgacgccccgctcaaggacgagggcgacctgttcgacctcaccgtcgagcag
ctgctgccgatccgcacccacgtgctcgaccccgacacctccgagcccaagaccgacccc
aagaccggcgagcccaaggtcgtctcgttcttcgccaacctcaagggcgagcccaagaag
accgtggagaagctgttcgagcagctggagatcgccaagtcgcgcccgctgtggcgggtg
ctggtggcgctgtccatccggcacgtgggcccgcgcgccgccgaggacctggcccggcac
ttccggtcgatggacgccatccgcgccgcctcggaggaggagctggccgcggtggacggg
atcggcccgaccatcgcccgctccatccgggagtggttcgaggtcgactggcaccgggag
atcgtcgccaagtgggcggcggccggggtgcgcatggaggacgaggtcgacgaggccctc
tcgggcgtgctggacggagtgaccgtggtggtcaccggctcgctggagggcttcacccgg
gacggggccaaggagtcgatcgccgaacgcggcggccgggccacggcgtcggtgtccaag
aagaccgggttcgtggtggtgggcgacagccccgggtccaagtacgacaaggccgtcaag
ctgggcgtgccgatcctcgacgagcaggggttccgcgtgctgctggaggcggggcccgag
gcggcggagaaggtgcggatcaacccgccggaggaggagcccggggacggggacgccgct
ggggccgaggccggggccgaaaaggccggggacggctccggggccgcggcggaggaggcc
cccgcgcaggagtag
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