Neisseria canis: NCTC10296_00152
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Entry
NCTC10296_00152 CDS
T06799
Symbol
ligA_1
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nci
Neisseria canis
Pathway
nci03030
DNA replication
nci03410
Base excision repair
nci03420
Nucleotide excision repair
nci03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC10296_00152 (ligA_1)
03410 Base excision repair
NCTC10296_00152 (ligA_1)
03420 Nucleotide excision repair
NCTC10296_00152 (ligA_1)
03430 Mismatch repair
NCTC10296_00152 (ligA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nci03032
]
NCTC10296_00152 (ligA_1)
03400 DNA repair and recombination proteins [BR:
nci03400
]
NCTC10296_00152 (ligA_1)
Enzymes [BR:
nci01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC10296_00152 (ligA_1)
DNA replication proteins [BR:
nci03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC10296_00152 (ligA_1)
DNA repair and recombination proteins [BR:
nci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC10296_00152 (ligA_1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC10296_00152 (ligA_1)
MMR (mismatch excision repair)
DNA ligase
NCTC10296_00152 (ligA_1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC10296_00152 (ligA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
DUF6400
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
VEE99069
UniProt:
A0A1X3CXP8
LinkDB
All DBs
Position
1:complement(152814..155237)
Genome browser
AA seq
807 aa
AA seq
DB search
MNDLSHRIRTLTDQLNRYAHEYYTLDAPTVPDAEYDRLFRELEALEAAHPELRLPESPTQ
RVGGGLLAGFESVRHEVPMLSLSNAFSPQDDNGVFDHAEMLAFDERVRSSLGGGKPEYVI
EPKFDGLAVSLLYRNGVLVRGATRGDGETGEDITQNVKTIGNVPLRLYGSDAPELIEVRG
EVLMLKADFEALNRRQAEAGQKTFANPRNAAAGSLRQLDSRITAQRKLHFFAYGIARQQG
GKVLEAHIQELAYLSELGFSLPHGHFGCFRNIAEVLRFYEDMRQKRPELPYEIDGMVVKV
NSLAQQRELGFISRAPRWAVAHKFPAEEALTVVEAIDVQIGRTGAVTPVARLQPVFVGGV
TVTNATLHNQDEVSRKDVRVGDTVVVRRAGDVIPEVVRVVADRRPMRAANVSDRHLQETV
QSDLFVPAVESGGAEPVYLPYRLPVHCPICGSDIEREAGEAVARCSGGMLCQAQRAQGLI
HFASRKAMDIEGLGQRQIEALVEQDLVRHFADLYHLDIAALQRMKENAAEDVADEGKNKK
QSPTKWAQNILDGIAASRQPELSRFLFALGIRHVGERTAKVLAQAFGTLENVRRAPEPLL
ACLPDIGAVVACSIAHFFAQSEQQAMIDELLAAGVMPKTQPVSLPLAQYAQPQKWLARLP
GIRLTENKAQALWDLAGQDIDALLNDKALPAEWQAWRAADENRRLLQAVQHFLAENLSDD
QPVEVSDRHHAAAGKTFVLTGTLPTLKRDEAQALIEAAGGKVSGSVSKKTDYVVAGEAAG
SKLEKANALGVAVLDETALIEILNKSE
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacttatcacaccgcatccgaacgcttaccgaccaactcaaccgctatgcccac
gaatattacacgctcgacgcgcctaccgtgccggatgcggaatacgaccgactgttccgc
gaactggaagcgctggaagcggcgcatcccgaactacgcctgcctgaaagcccgacgcag
cgggtgggcggcggcttgttggcgggcttcgagagcgtgcggcacgaagtgcccatgttg
tcgctttccaatgctttttcgccgcaggatgacaacggcgtgttcgaccatgccgaaatg
ctggcgttcgacgagcgggtgcgcagcagtttgggaggcggcaagcccgagtatgtgatt
gaaccgaagttcgacggcttggccgtgagcttgctgtatcgcaacggtgtgttggtgcgc
ggtgcaacccggggcgacggcgaaacaggcgaagacatcacgcaaaacgtaaaaaccatc
ggcaacgtgccgttgcgcctgtatggcagcgatgcacccgagttgattgaagtgcgcggc
gaagtgctgatgctgaaggccgattttgaagcattaaaccgtcggcaggccgaggcgggg
cagaaaacctttgccaatccgcgcaatgccgcagccggcagcctgcgccaattggattcg
cgcatcacggcgcaacgcaagctgcatttttttgcttacggcattgctcgccagcagggc
ggtaaagtgctcgaagcgcatattcaggagctggcttatttaagcgaactcggattcagc
ctcccgcacgggcatttcggctgcttccgcaatatcgcggaagtgttgcgtttttatgaa
gatatgcgccaaaaacgccccgagttgccatatgaaatcgacggcatggtggtgaaggtg
aacagcttggcgcagcagcgcgagctgggttttatttcccgcgcgccgcgctgggcggtt
gcccacaagtttcctgccgaggaggcgttaacagtggtggaggcgattgacgtgcagata
ggccgcacgggcgcggtaacgccggttgcccgtttgcagccggtatttgtgggcggtgta
accgtaaccaacgccactttgcacaatcaggacgaagtgagccgcaaagatgtgcgtgtg
ggcgataccgtggtggtgcgacgtgccggcgatgtgattcccgaagtggtaagggttgtg
gcagataggcggccgatgcgcgctgcaaatgtttcagacaggcatctgcaagaaaccgtg
cagagcgatttgtttgtgcccgccgtggaaagcggaggcgcagaaccggtttacctgcct
taccgtttgcccgtgcattgtccgatttgcggcagcgacatcgagcgtgaggcgggggaa
gcggtggcacgctgcagcggcggaatgctttgccaagcccagcgcgctcagggtttgatt
cattttgcttcgcgtaaagcgatggatatcgagggtctggggcagaggcagattgaggct
ttggtggagcaggatttggtacgccattttgccgatttatatcatttggatattgccgct
ttgcagcgtatgaaagaaaatgccgccgaagatgtggcggacgagggcaaaaataaaaaa
cagtcgcccaccaaatgggcgcagaatattcttgacggcattgccgccagccggcagccg
gaattgtcgcgttttctgtttgcgctcggcatccggcatgtgggcgaacgcacggccaaa
gtgctggcgcaggcgttcggtacgcttgaaaacgtgcggcgggcgccggagccgctgttg
gcctgtttgcccgacatcggcgccgtggtggcctgttcaatcgctcattttttcgcacaa
agtgagcaacaggcgatgatagatgagctgttggcggccggtgtgatgccgaaaactcag
ccggtcagcctgcctttagctcaatatgcacaaccgcagaaatggctggcccgcctgcca
ggcatccggcttaccgaaaacaaggcgcaggctctgtgggatttggcggggcaggatata
gatgcgttgctgaacgataaagctttgccggccgagtggcaggcatggcgcgcagcagat
gaaaaccgcagattgttgcaggcggttcagcactttctggcggaaaacctgtctgacgat
cagcctgttgaggtttcagacaggcatcatgccgcagcaggcaaaacctttgtgttaacc
ggaacgctgccgaccttaaagcgtgatgaagcacaagctttgattgaagcggcaggcggc
aaggtatcgggcagcgtgtcgaagaaaaccgattatgtggtggctggcgaggcggcaggc
agcaagctggagaaagccaatgctttgggcgtggcggtgttggacgaaaccgcattgatt
gaaatcttgaataaaagtgaataa
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