Neobacillus cucumis: QNK12_01715
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Entry
QNK12_01715 CDS
T09078
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ncm
Neobacillus cucumis
Pathway
ncm03030
DNA replication
ncm03410
Base excision repair
ncm03420
Nucleotide excision repair
ncm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ncm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QNK12_01715 (ligA)
03410 Base excision repair
QNK12_01715 (ligA)
03420 Nucleotide excision repair
QNK12_01715 (ligA)
03430 Mismatch repair
QNK12_01715 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ncm03032
]
QNK12_01715 (ligA)
03400 DNA repair and recombination proteins [BR:
ncm03400
]
QNK12_01715 (ligA)
Enzymes [BR:
ncm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QNK12_01715 (ligA)
DNA replication proteins [BR:
ncm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QNK12_01715 (ligA)
DNA repair and recombination proteins [BR:
ncm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QNK12_01715 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QNK12_01715 (ligA)
MMR (mismatch excision repair)
DNA ligase
QNK12_01715 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QNK12_01715 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
RNA_pol_A_CTD
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
WHY92264
LinkDB
All DBs
Position
325286..327292
Genome browser
AA seq
668 aa
AA seq
DB search
MDLQTAEQRINELKSLLNQYGYEYYVLDKPTVPDAEYDRLMQELLNLEEKFPELKTSDSP
SERVGGPVLDLFEKVEHRTPMLSLGNAFNDGDLRDFDRRVRQAVGDDVSYVCELKIDGLA
VSLRYENGLFHQGATRGDGTIGEDITANLKTIKSIPLRLRENVSIEVRGEAFMPKRSFEA
LNRAKEENGEEPFANPRNAAAGSLRQLDPKMAASRNLDVFLYGIADIGGLGVTSHSEGLD
YLDALGFKTNKERRKCSGIDDVIEYVNSWVEKRPHLPYEIDGIVIKVDSLEQQEQLGTTA
KSPRWAVAFKFPAEEVVTTLLDIELSVGRTGVVTPTAILIPVKVAGTTVQRASLHNEDLI
REKDLKIGDKVVIKKAGDIIPEVVNVLAEERTGTERDFYMPTHCPECESELVRLDGEVAL
RCINPKCPAQIREGLIHFVSRDAMNIEGLGERVISQLFAEKLIADVADIYKLTREQLLAL
ERMGEKSVSNLLKAIEASKSNSLEKLLFGLGIRHVGAKAAKTLAQEFGLMDHLAAATKEQ
LISINEIGEKMADSIVTFFEKEEVTSLLKELSSYGVNMEYKGAKPVLAAESDSIFAGKTI
VLTGKLEKLSRNEAKEKIEALGGNVAGSVSKKTHLVIAGEEAGSKLSKAQELGIEVWDEE
KLLAELNK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggaccttcaaacggctgaacaaagaatcaatgaactaaaaagcctattaaatcaatat
ggctatgaatattatgtgctggacaaaccaaccgttcctgatgctgagtacgatcgctta
atgcaggaactattaaacctggaagaaaagtttccagagttgaaaacgtcggattctcct
tctgaacgtgttggcggacctgtattagacctttttgaaaaggttgagcatcgtacaccg
atgcttagccttggtaatgcttttaatgacggagatttaagagattttgaccgccgggtt
cgtcaagcggtgggtgatgacgtttcctatgtttgcgaattaaaaattgatgggctggcc
gtttccttacgctatgaaaatggattgttccatcaaggggctacgcgtggggacggcacg
atcggcgaagatattacggccaacttaaaaacgattaaatcaattccgttacgtttacgt
gagaatgtttccattgaggttcgtggagaggcatttatgccgaagcgttcctttgaagcc
ttaaatcgggcgaaagaggagaatggagaagaacctttcgcaaacccgagaaatgcagcg
gccggttcccttaggcagcttgacccgaaaatggcagcatcgcgaaatctcgatgttttt
ttatacggtattgctgatattggagggttaggtgtaacctcccatagtgaaggacttgat
tatctggacgccctcgggtttaaaaccaataaagagcgaagaaaatgttcgggaattgat
gatgtgattgagtatgtcaacagctgggttgaaaagcgtccgcatcttccttatgaaatt
gatggaattgtcattaaagtagattcactcgaacagcaggaacagctcgggacaacagct
aaaagcccacgttgggcggttgcgtttaaattcccagctgaagaggtagtgaccacatta
ttagatattgaactgagtgttgggcggacaggagtggtaactccaacagcgattcttata
ccggttaaggtagcagggacgactgtacagcgtgcctctttgcataatgaagatttaatc
cgtgaaaaggatttaaaaattggcgataaagtcgtgatcaaaaaggccggcgatatcatt
ccggaggtcgtaaatgtccttgctgaagagcggacaggcaccgaaagagatttttacatg
ccaacgcattgtcctgaatgtgaaagtgagcttgtccgtcttgacggggaagtagcttta
cggtgcatcaatccaaaatgcccggcacaaatccgcgaaggtctgatacactttgtttcg
cgtgatgccatgaatatcgagggtctaggggaaagagtcatcagccagctttttgccgaa
aaattaattgccgatgtcgctgatatttataagcttacaagagagcagcttttagccctt
gaacgaatgggggaaaaatcggtttccaatctgttaaaggcaattgaggcttcaaaaagc
aattcacttgaaaaactgctttttggtcttggtatccgtcatgttggcgcgaaagcagca
aaaacattggctcaggaatttggtttaatggaccatcttgccgccgcgacaaaggaacaa
ttgatttctattaacgaaattggggaaaaaatggccgattctattgttaccttttttgaa
aaagaagaagtgacctcattgcttaaggaactatcctcttacggagtcaatatggaatat
aaaggggccaaaccagttttagcagcggagtctgattcaatttttgccggaaaaacaatt
gtccttaccggaaaactagagaaactatcgcgcaatgaagccaaggaaaaaattgaagca
ctaggcgggaatgttgctggaagcgttagtaaaaaaacgcatctggtcattgccggagaa
gaagccggttctaagctttccaaagcgcaagaactaggaattgaagtatgggacgaagag
aagctattagctgaattaaataaataa
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