Nostocales cyanobacterium HT-58-2: BZZ01_18700
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Entry
BZZ01_18700 CDS
T04905
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ncn
Nostocales cyanobacterium HT-58-2
Pathway
ncn03030
DNA replication
ncn03410
Base excision repair
ncn03420
Nucleotide excision repair
ncn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ncn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BZZ01_18700 (ligA)
03410 Base excision repair
BZZ01_18700 (ligA)
03420 Nucleotide excision repair
BZZ01_18700 (ligA)
03430 Mismatch repair
BZZ01_18700 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ncn03032
]
BZZ01_18700 (ligA)
03400 DNA repair and recombination proteins [BR:
ncn03400
]
BZZ01_18700 (ligA)
Enzymes [BR:
ncn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BZZ01_18700 (ligA)
DNA replication proteins [BR:
ncn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BZZ01_18700 (ligA)
DNA repair and recombination proteins [BR:
ncn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BZZ01_18700 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BZZ01_18700 (ligA)
MMR (mismatch excision repair)
DNA ligase
BZZ01_18700 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BZZ01_18700 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
HHH
DUF6792
DUF4796_N
Auto_anti-p27
PHD_NSD
Motif
Other DBs
NCBI-ProteinID:
ARV63104
LinkDB
All DBs
Position
complement(4619242..4621290)
Genome browser
AA seq
682 aa
AA seq
DB search
MQAINIEAKQRVQELRQLLQKASYAYYVLDAPIMEDAVYDRLYRELQQLENQNPELVTPD
SPTQRVGEKPATQFISVRHNIPLYSLENAFNIDELKAWEQRWRRQTPNVEQVDYVCELKI
DGSALALTYENGILTRGATRGDGVTGEDITQNVRTIRSIPLRLNVETLRANSLPERLEVR
GEAFLPLEVFKQINEERQKAGEAVFANPRNAAAGTLRQLDSRIVAKRRLDFFAYTLHIPG
RDDASIANTQWEALELLKNLGFRVNPNHTLCPSLKDVAEYYEYWDTERLNLQYMTDGVVV
KLNSFKLQEQLGFTQKFPRWAIALKYAAEEAPTRVENIAVNVGRTGALTPLAEMRPVQLA
GTTVSRATLHNADRVAQLDIRIGDTVIVRKAGEIIPEVVQVLKELRPADAQPFVMPSQCP
VCGQPVVRETGEAVTRCVNASCPAILKGAIEHWVSRDALDIRGMGEKLVHQLVDRGLVHS
VADLYDLTEDKLSSLERMGKKLAQKLVEAISQSKNQSWSRVLYGLGIRHVGSVNAQLLSE
KFATVEQLATASQADIETVYGIGAEIAQSVHQWFHISANQTLISRLKDAGLQLATKQEAT
EVSQSHQKLAGKTFVITGTLPTLKRDEAKALIQQAGGKVTDSVSKKTDYLVTGEDAGSKL
VKAQELGVPQLSEEQLLEMLQD
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagcgatcaacatagaagctaaacagcgggttcaagaactacgacaactactacaa
aaggctagctacgcctactacgtcctagatgcacccatcatggaggacgcagtctatgat
cggctgtatcgagaattgcaacagctggaaaatcagaatccagaattggtgacacctgat
agtcctactcaacgggtgggagagaaacccgcaacccaatttatctcggtacgtcataat
attccactctatagtttagaaaacgcgtttaacattgacgagttaaaggcatgggagcaa
cgctggcgacgacaaacacctaacgtagaacaagtagactatgtctgcgagctgaaaatt
gatggttctgccttagcgttgacatatgaaaatggtattctcaccagaggtgcaaccagg
ggtgatggggtgacaggtgaagacatcactcaaaatgtgcggacaattcgctcaattcct
ttgcggttaaatgtagagacattacgtgcaaattctctcccagagaggttggaagtgcgg
ggtgaagcgtttttacctttggaagtgtttaaacaaattaatgaggaaaggcaaaaagca
ggtgaagcagtctttgccaatccgcgaaacgctgctgcaggaaccctaagacaactagac
tctcggattgtagctaaacggcggttagatttctttgcctacacactgcatattcctggc
agggatgatgctagcattgctaacacacagtgggaagccttggaattgttaaaaaatttg
gggtttcgcgtcaaccctaaccacacattgtgtccgtctttgaaagatgttgctgagtat
tatgaatactgggatacggaacggctgaatttgcaatacatgactgatggggtggtagtc
aagctgaattcttttaagcttcaagaacagcttgggtttacacaaaagttcccccgttgg
gcgatcgccctgaagtatgcagcagaggaagcacccacccgtgtggaaaatattgctgtg
aatgtgggaagaacgggggcgctgacacctcttgcagaaatgcgtcctgtgcaactggcg
gggacaacggtttcccgtgcaacactacacaatgctgaccgcgttgctcagttagatata
cgtatcggtgatacagttattgttcgcaaagctggtgaaatcataccagaagtggtgcag
gttcttaaagaactccgccctgctgatgcccaaccctttgtcatgccttctcaatgccca
gtttgtggtcaacctgttgtcagggagacgggggaagcggtgactcgctgtgtcaatgcg
tcgtgtccggctatcctgaagggggcgatcgagcattgggtcagtcgcgatgctttggat
attcgaggtatgggcgaaaaattggtgcatcaactcgtagatagaggcttggtgcattct
gttgccgatttatacgacttgacagaagataagttgtctagtttggaacgaatgggcaaa
aagttggcacagaagttggtggaagccatcagccaatcgaaaaaccaatcttggtcgcgg
gtcctgtatggtttaggtattcgtcacgttggtagcgtgaatgcccaattgttaagtgag
aagtttgccacagtggaacagttggctacagcctcacaagcagatattgaaactgtttac
ggtatcggcgcggaaattgcccagtctgtacaccagtggttccatatcagtgcgaatcaa
actttgatttctcgcttgaaagatgctgggttgcaacttgctaccaaacaggaagcaaca
gaggtgagtcagagtcatcaaaagttggcagggaaaacttttgtgattactggtacactt
cccacgttgaaacgggatgaggcgaaggcgttaattcaacaagctggtggtaaggtgact
gattctgtgagtaaaaaaacagattatcttgtgacaggggaggacgcgggttctaagttg
gtaaaggcgcaagagttaggagttccgcagttgagtgaagagcagctgttagagatgttg
caggattaa
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integrated database retrieval system
