KEGG   Nymphaea colorata (blue-petal water lily): 116247215
Entry
116247215         CDS       T07418                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
ncol  Nymphaea colorata (blue-petal water lily)
Pathway
ncol03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ncol00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    116247215
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ncol03021]
    116247215
Enzymes [BR:ncol01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     116247215
Transcription machinery [BR:ncol03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     116247215
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 116247215
NCBI-ProteinID: XP_031475100
LinkDB
Position
2:31384105..31408430
AA seq 1481 aa
MDDEKVVELSAPLGHLAAIEFQILTDDDMRKFAVMEVKDANDVCDPKLGIPNPSSSPCTT
CGSANIKFCDGHYGFIGLPIPIYHPALLHEIVQILNKICPGCKSLRRRKVNSRGILGFQE
DSAEREVEKSSGQDCKYCDRRGYLKQLYPLPKFKFTAKDINGRKCMGIMMEAKGGMLADD
YWDFVKADSTLEVHNKNIVGRFLSPYQAFCLLRVLDPAFVHKYVQRRESLLISSIPITPN
RHRVVEVNSYLAGSALMTDEHSKIYRRLVSGFSSAHSKEDVACTVGNLALDCFNACKLRT
RTSQISESGGCNTGLRWMKDVILGKRSDFAFRMTVVGDPNLCLGEIGVPIEIAQKLVIPL
HLNLINWKLVKACVESCIHQKAIYIRREGSLVSVNSMSQLEIGDVVYRSIKDGDMVLVNR
PPSVHQHSLIAFVVRVLPLKSVVSINPLCCRPFFGDFDGDCFHGFVPQSVNARVELQELM
ALDRQLLNGQNGQTIVSLSHDSLTAAHIVTKGQTLFNKVQIQQLSMFCHGPLQEPAIVKA
PLLNGSCWTGEQFFSMLLPQHFDYCNDRNGVLISSGELLVCSQDSGWLHNSSSSIISFLS
KHGPSVVLDYLFHAQRALSEWISDDGLSVSLLDMYLSRTAASRIKMMEEVSCGLDDAECL
SSTTHLMMKAEREFHTSNADIKHKPFAKAANHERNLPRLGCDLGDAFKRMYPDIINVILE
HIDKDNSMLTMIGAGSTGNIQKLVQQGACLGLQSLRDASSFKIRSGLPDSQLSQSKASQM
HPCVETNIECSQERSSFAVVRSSFLTGLSPLDCLVHSSSIRGASFSDNADVPGTLVRKLM
FYMRDLLVCYDGTVRSVYGNQIIQFSYKNCERIQYENDRACYMAKYSNSSIVSPTNEISR
CANNGIGGHPVGVLATCSISEALYGALDHPTCSSSSPLLMFKEALECGSKSTGTSSTASL
YLSEELGQWKYGYEYGAMEIKRHLERVILSDVVDNILVLYCKDVDTIFAKEKHSPWIIHL
HLNEEGLRRRALTVGFIVKALCTGYDTSRRRAKTVLPDLHMSASNASLCDSSDNYGHMCC
IMVAEVCSQNDIAAVHDSSHHLNVVKASVIPVLLQTTIRGSSQFKNVDILWKDGSKKPGF
RKSGKLYLRVVSDNCRPKKLWSSLQEACSAFTDLIDWGRSQPDSVADVFHGFGVDAAWNC
FVNNMKSVFCDLGKTIHEEHLVVTADCLSVTGEFHGLNVQGIKQQRNQMSISSPFSQACF
SKPLQWFTKAAKKGMVDDLSGALDAVSWGKDPASGTRGSFEILHSDKVDVSAGSGNIYAI
LCNSLPNSCKSSTPTPKLHVTSKSMSMSGDLTFEENHKLKYKALSALRKLDHWDLSVELY
NKLKCMLKKYQKMESIPDQDKAIVLEALSYHPREREKVGCGVQDIKVGSSMEFPQSCCFV
LVRTDGTEEDFSYLKCVSGFVGCISPAIRDEFERRYCWKKT
NT seq 4446 nt   +upstreamnt  +downstreamnt
atggatgatgagaaggtggtggagttatctgcaccattaggacacttagcagctattgaa
tttcagattttgacagatgatgacatgagaaagtttgctgttatggaagttaaggatgca
aatgatgtatgtgatcctaagttgggcataccaaatccttcctctagcccatgcacaaca
tgtggctcagctaacatcaaattttgtgatggacattatggatttattggattgcctatc
cccatctatcatccagccttacttcacgaaatagtgcagattctcaataagatttgtcct
ggttgtaagtcactgaggaggaggaaagtcaactctcgtggtattttgggatttcaagaa
gactcagcagaaagagaagttgaaaaatctagtggacaagactgtaaatactgtgacaga
cgaggttaccttaagcagttgtatccacttcctaaattcaagtttactgcaaaggacata
aatggaaggaaatgtatgggcataatgatggaagccaaaggtgggatgctggctgatgat
tattgggattttgtcaaggcagattcgaccttagaggttcataacaagaacattgttgga
aggtttctttctccttatcaggccttttgtttattgagagtcctagatccagcattcgtg
cacaaatatgttcaaaggcgagaatctcttcttatatcatctattcccattactccaaat
cgtcatcgtgtagtggaggtgaactcatatcttgctggatcagcattgatgactgatgaa
cactcaaagatctataggaggctagttagtggcttcagctcagctcactcaaaagaagat
gtagcgtgtactgtaggaaatttggcattagattgcttcaatgcatgcaagttaagaaca
agaacatctcaaatctcagagtctggtggctgcaatacagggttgaggtggatgaaggat
gttattcttggcaaacgttcagattttgcttttcgtatgactgtggttggtgatccaaac
ctctgcctaggtgaaattggggttccaattgagatagctcagaagcttgtcattcctttg
catcttaatttaattaactggaaacttgtgaaggcatgtgttgaatcttgcatccatcaa
aaggctatctatattcgaagagaaggttctctggtttcagtgaatagtatgagccaactt
gaaataggtgatgttgtgtacagaagtatcaaagatggggacatggtattggtgaacaga
cctccatctgtacatcaacattctctcattgcatttgtggtacgggtgcttcctttgaag
tctgtagtttcaattaacccactgtgttgcagacctttctttggggattttgatggagat
tgttttcatggatttgttccccagtcagttaatgcaagggtggaattacaggaactaatg
gcattggataggcagttgttaaatgggcaaaatggtcaaacaattgtttccttgagtcat
gatagtctgactgcagcacacatcgtaaccaaaggtcaaaccttgtttaataaggttcaa
attcagcagctgagcatgttctgtcatggaccattgcaagagccagcaattgttaaggca
ccactactgaatggctcttgttggacgggtgagcagttctttagtatgctactgccacaa
cattttgactactgtaatgatagaaatggtgttctaatctccagtggcgaacttttggta
tgttcacaagattctggctggcttcataattctagtagtagcattatttcgtttttgtcc
aagcatggaccttctgtcgtccttgactatctttttcatgctcaaagggctctttctgag
tggatatcagatgatggattaagtgtttctctattagacatgtatttatctcgtactgca
gcttcaaggattaagatgatggaagaagtaagttgtggacttgatgatgctgaatgtcta
tcttctactacgcatttgatgatgaaggcagaaagggaatttcatacgtcaaatgctgat
atcaaacacaaaccatttgctaaagctgctaatcatgaaaggaatctccctaggctggga
tgtgatttgggagatgccttcaagagaatgtatcctgatatcataaatgtaatccttgaa
catattgataaggataactccatgttgacgatgataggagctggtagcactgggaatatt
cagaaacttgtgcagcaaggtgcatgtctcggcttacaatcactaagggatgcttcttca
tttaagatccggtctgggcttccagactctcagttgagtcagtcgaaggcttctcagatg
catccatgtgttgaaacaaatattgagtgcagtcaagaacgttcatcctttgctgttgtt
agaagctcatttttgactggtttaagccctttggactgccttgtgcattcatcatctatt
cgtggtgccagtttcagtgataatgctgatgttccggggaccctagttaggaaactgatg
ttttacatgcgagacctacttgtttgttatgatggaacagttaggagtgtgtatggtaac
cagattatacaattttcctacaaaaattgtgagcgtatacaatacgagaatgatagggca
tgttacatggcaaaatattccaattcttcaattgtgtcacccactaatgaaatcagtaga
tgtgcaaataatggaattggtggtcatcctgttggtgtgttggctacctgctcaatttca
gaagctctatatggtgctttggatcatccaacctgttcaagcagttcccctctgctaatg
ttcaaggaggcattggaatgtgggagcaaaagcacagggacaagttcaactgcatcactt
tacctatcggaagaacttggacaatggaaatatggttacgagtatggtgcaatggagatc
aaaagacatcttgaaagagttattctttctgatgttgttgacaacatccttgttttgtac
tgtaaagatgtcgacacaatctttgccaaggaaaaacatagtccctggatcattcatctg
catctgaatgaggagggactgcgaagaagggctttgactgttgggtttattgttaaggca
ctttgcacaggatatgacacgtccaggcgaagagcaaagactgtccttcctgatttgcat
atgtctgcaagcaatgcttctttatgtgatagctcggataactatggccatatgtgctgc
atcatggttgctgaagtctgttctcaaaatgatattgctgctgtgcatgacagttcccac
catttgaatgttgtgaaggcttcggttattccagtacttctacagacaactattagagga
tcatcacagtttaagaatgtggatattttgtggaaggatggcagcaagaagccagggttt
cggaagtctggcaaactttatctgagggttgtatctgacaactgccgtccaaagaaatta
tggagttcccttcaagaagcatgttctgcctttactgatttgattgactggggacgcagt
caaccagatagtgttgctgatgttttccatggatttggtgtagatgctgcatggaactgt
tttgttaataatatgaaatctgttttctgtgacttggggaagaccatccatgaggagcat
ctagttgttacagccgactgtctttcagttactggagagtttcatgggttaaatgtccaa
ggaattaaacagcaaagaaatcaaatgtccatttcctctcccttttcacaagcctgtttt
tctaaaccccttcaatggttcacaaaggcagctaagaaagggatggtggatgacctttct
ggggctttggatgctgtttcatggggaaaagatcctgcaagtgggacaaggggtagtttt
gaaatcctgcattcagataaggttgatgtttcagcagggtctggcaatatctatgcaata
ctctgtaactcgctgccaaattcctgtaaaagctcaacaccaacgccaaaactccatgtg
acatcaaaatctatgtctatgtctggtgatctaacatttgaagaaaatcataaattaaaa
tacaaagcgctttctgctttgagaaagttagatcactgggacctttcagtggaattgtac
aacaaattgaagtgcatgttgaaaaaataccaaaaaatggaaagcatacctgaccaggac
aaggccattgtgttggaagccctgtcgtatcaccctagagaaagagaaaaagtgggatgt
ggagttcaagatatcaaggtcgggtccagtatggaatttccgcagtcttgctgttttgtg
ctggtaagaacagatggtacggaggaggatttttcgtacctcaagtgtgtttctggtttt
gttggctgcatttcacctgcaatccgagatgagtttgagaggaggtactgttggaaaaag
acttag

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