Nymphaea colorata (blue-petal water lily): 116247275
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Entry
116247275 CDS
T07418
Name
(RefSeq) 5'-3' exoribonuclease 4 isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
116247275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116247275
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
116247275
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
116247275
NCBI-ProteinID:
XP_031475199
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All DBs
Position
2:13904544..13926200
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AA seq
959 aa
AA seq
DB search
MGVPAFFRWLVDRYSLAVTDVVEEEPREGPDGVLLPVDPSRPNPNGMEFDNLYLDMNGII
HPCFHPEGKPAPATYDDVFRCIFDYIDHLFSLVRPRKLLYLAIDGVAPRAKMNQQRSRRF
RAAKDVADAAAEEEKLRMEYEAEGRSLPPKLKTETFDSNVITPGTEFMAALSVALQYYIQ
LRLNRNPGWWGIKVILSDANVPGEGEHKIMSYIRLQRNLPGFNPNTRHCLYGLDADLIML
SLATHEVHFSVLREVITMPGQQDKCFLCGQVGHLAAECKGNCDQNQATGSHEKPVDDTPI
YKKRYQFLNIWVLREYLQYDLEIPDPPFKINFECLVDDFVFMCFFVGNDFLPHMPTLEIR
EGAINLLMSVYKREFREIGGYLTDTGEVNLGRVEKFVQLVAIHEDRIFQKRARIHQAQEN
AELRTRKESSEEAQLPIPDKVRLGEPGYKERYYVEKFGLKTPQVVEETRKDVVLKYVEGL
CWVMRYYYQGVCSWQWFYPYHYAPFASDLKDLAELEITFFLGQPFKPFDQLMGTLPAASS
DALPKHYQALMNDPVSPISSFYPSDFELDMNGKRFAWQGVVKLPFIDENRLLAETKKLEG
TLTEEEKTRNTIMFDLLYVNSSHPLALLIGSLYRTCLQFPVEYWTPYVIDTSLSDGMNGY
LCLSWRNVFAYTVPSPIKGLENINDNHVLNATYLNPPSHQHIPEPPEGVIMPRRILTPLD
IKPSPVLWHEDYGGRRQQTRERPQVPNAISGPLLGEAAHRLLKNTLQLPNNGPRVSQFSY
GSSRAYDPQERNGSTYVLNRPRPIGPSGYEQGFGPSSSQNRDTNRKLHDFYGRSSSRPAS
TYLDVQDTRQGSRTQDRHLRPQFTNIQAEMLALTIHGRQEVVYQPRPGMFVRASNPGFQT
NRQPAQSTYAPPPPPTKWVAKTAYTVPPAEMIFDDGTDNRPVKKGYQDPLNMPRSGNPL
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgcccgccttcttcagatggcttgtcgaccgttattctcttgccgtcaccgat
gtcgtcgaggaggagccacgagagggacccgacggcgtcctcctcccggtggacccatcg
aggcccaacccaaacgggatggagttcgacaatctctatcttgacatgaatggaatcatt
cacccgtgcttccaccccgaagggaagcctgcaccagcaacttatgatgatgttttcaga
tgcatctttgattacattgatcatctattttcattggttcgcccacgaaagcttttatac
ttggcaattgatggtgttgcacccagggcaaaaatgaatcaacagcgttctcgtcgtttc
agggctgcaaaagatgtagctgatgcagcagcagaggaggaaaagctaaggatggagtat
gaagcagaagggagaagtcttcctccaaaattgaaaaccgaaacatttgattcaaatgtc
ataactcccggcactgaatttatggctgcactatcagttgcactccaatattatatacag
ctaaggctgaaccggaaccctggatggtggggcataaaggttatactgtcagatgcaaat
gtgcctggtgaaggcgaacacaagatcatgtcatatattcgtttgcaacgtaacttacca
ggtttcaacccgaacacacgtcattgcctgtatggattggatgcagatttgattatgctc
tccctagcaactcatgaggttcatttttcagttttgagagaagttatcaccatgcctggt
caacaggataagtgcttcttgtgtggtcaagttggacatttggcagcagaatgcaaagga
aattgtgatcagaatcaagctacaggatcacatgaaaagcctgttgacgatactccaatt
tacaagaaaagataccagttcctcaacatctgggtgttgcgagagtatttacagtatgat
ttggagatacctgatccaccattcaagataaacttcgaatgtcttgttgatgattttgta
tttatgtgtttttttgttgggaatgattttcttccacatatgcctactttggaaattcgt
gagggtgcaataaacctgctgatgtctgtatataaaagagaatttagggaaattggtgga
tatctcactgatactggtgaggtaaatttggggagggtggaaaaattcgttcagctggtt
gctatccatgaggaccggatttttcagaaacgagcacgtatccatcaggctcaagaaaat
gctgagcttagaacaagaaaagaaagctctgaggaagcacagctaccaattccagataag
gtcagattaggggaacctggttacaaggagaggtattatgttgagaagtttggtcttaaa
acacctcaggtggttgaagagactcggaaagatgttgttttaaagtatgttgaaggcctt
tgctgggtgatgcgatactattatcagggtgtctgctcatggcaatggttctatccttat
cactatgctccttttgcatccgatcttaaagatttggcagaacttgagatcacatttttc
ttgggacagccatttaaaccatttgatcagcttatgggcacacttccagctgcaagttct
gatgctctacctaaacactatcaagctttgatgaatgatccagtatcacctatctcttca
ttttatccttctgattttgagttagacatgaatggtaagcgcttcgcatggcagggtgtg
gtcaagttaccttttatagatgaaaatcgtttgcttgctgaaacaaaaaagcttgagggt
actttgacggaagaggagaagaccaggaataccatcatgtttgatttactttatgtaaat
agcagccatcctttggctttgctcattggctcactgtacagaacctgtctccagttccca
gttgaatattggactccttatgtgattgacacgagtctgagtgatgggatgaatgggtat
ctttgcctatcttggaggaatgtgtttgcttatacagtgccatctcctatcaagggactc
gagaatatcaatgataatcatgtcctgaacgcaacatatctcaaccctccatcacatcaa
catattccagaacctccagagggtgtaatcatgccaagacggattctaaccccattggac
ataaaaccttccccagtattgtggcatgaagattatggtggtcggcgtcaacaaaccaga
gagagaccgcaggtgccaaatgccatttctgggcctctgttaggagaggcagcacatcgt
ctactgaaaaacacactacagttaccaaataatggtcccagagtttcacagttttcttat
ggcagttcaagagcttacgatcctcaagagcggaatggttcaacctatgttcttaatagg
ccaaggccgattgggccctctggttatgaacaagggtttgggccctcttccagtcagaat
cgtgataccaaccgtaaattgcatgatttttatggtcgatcatcctcaagaccagcctcc
acatatcttgatgtacaggataccagacagggttccagaacacaagatagacaccttcga
cctcaattcacaaacattcaggctgaaatgttggcattgacaatacatggccgtcaagag
gtggtctatcagcctcgaccaggaatgtttgtaagggcatccaaccctggttttcagact
aaccggcaaccagcacagagtacttatgctccgccaccaccaccaacaaaatgggttgca
aagacagcttatacagttccacctgctgaaatgatttttgatgatggaacagacaataga
ccagtgaagaagggttaccaagaccctttaaatatgccacgttctggtaaccctctgtaa
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