Nymphaea colorata (blue-petal water lily): 116252694
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Entry
116252694 CDS
T07418
Name
(RefSeq) ABC transporter I family member 19-like
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116252694
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116252694
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116252694
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
ORC-CDC6-like
AAA_29
AAA_5
nSTAND3
AAA_22
AAA
AAA_28
NACHT
AAA_23
AAA_15
SMC_N
AAA_30
AAA_18
AAA_16
AAA_25
AAA_33
ATP-synt_ab
SRP54
Zeta_toxin
PduV-EutP
Arf
AAA_7
DUF3584
Motif
Other DBs
NCBI-GeneID:
116252694
NCBI-ProteinID:
XP_031482993
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All DBs
Position
4:complement(27148949..27153021)
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AA seq
294 aa
AA seq
DB search
MDGEEQREGNASYSISVKGMNFAYQDQPPLFTDFNLTISSGSRCLLVGANGSGKTTLLRI
LAGKHMVGGRDVIRVLNSSAFHDTQLVCSGDLAYLGGSWSKNAGCAGEIPLQGDFSAKHM
IFGVEGIDPARRDKLVELLDINLQWRMHKVSDGQRRRVQICMGLLRPFQVLLLDEVTVDL
DIVARLDLLDFFKEECEQRGATVVYATHIFDGLETWATHLAYIIDGEQKRLEKLSELEEL
NTGTTLLSVVESWLRSECKDRRKKVVKPTSQQFSSTSPFDGSPFRSSRHLAYFR
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atggacggtgaggagcagagggagggaaatgcttcttattccatcagcgtgaaggggatg
aacttcgcctaccaggaccaaccgcctctcttcactgactttaacctcacaatctcttcc
ggttcccgttgcctcctcgtcggcgccaacggatctgggaagacaactttattgagaatt
ttggctggaaagcacatggttggaggcagagatgtaattagagtcctcaattcttctgct
tttcatgatacacaacttgtttgcagcggtgatcttgcttatctgggaggttcttggagc
aagaatgctggttgtgctggggaaattccattgcaaggcgatttctctgctaaacatatg
atttttggagtcgaagggatagatccagctaggagagataagctggttgaacttcttgac
ataaatctgcagtggcggatgcataaggtttctgatgggcagcgccgtcgtgttcaaata
tgtatggggcttctccgtcctttccaggtgctgctactggatgaagtcacggtggacttg
gatattgttgcacggcttgatttgcttgatttcttcaaggaagagtgcgaacagagaggt
gccacggtagtttatgccacccatatatttgatggcttggagacatgggccactcatctg
gcctacattatagacggcgaacagaagcgtcttgagaagctctcagagttggaagaattg
aacaccggcacgaccctgctctccgttgtagagtcttggctgcgtagcgagtgcaaggac
aggaggaagaaagtggtgaaacccacgagtcaacagttcagcagcacctcgccctttgat
ggctcccccttcaggtcatctaggcacctggcttactttcgctag
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