Nymphaea colorata (blue-petal water lily): 116255097
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Entry
116255097 CDS
T07418
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116255097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116255097
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116255097
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA_15
Arf
AAA_23
AAA_25
SMC_N
AAA
AAA_28
Zeta_toxin
AAA_30
TsaE
ORC-CDC6-like
nSTAND3
AAA_7
AAA_24
Motif
Other DBs
NCBI-GeneID:
116255097
NCBI-ProteinID:
XP_031486707
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All DBs
Position
5:15516309..15520999
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AA seq
321 aa
AA seq
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METICIDNLRFTYPGIDGQPPAGAEPVIEGFSLTLHAGDRCLLVGSNGAGKTTILKILGG
KHMVEPEMVRVLGRSAFHDTNLSASGDLCYLGGEWRRDIAFAGFEVPIQMDVSAEKMIFG
VSGIDHQRREELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLRPFKVLLLDEITVDLDVL
ARASILKFLKKECLERRATIIYATHIFDGLEDWPSHIVYVAHGKLQLALPMEVVKEASNL
SLMRTVESWLRKERDEDRRRKGRGAEGLPEYDECSDDNRVTSDPGRKAVQAINNGWAAGR
LNSTIAGQENYLFSSNSVLRQ
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccatttgcatcgacaatctcagattcacgtacccaggaatagacgggcaacca
cctgcaggcgccgaacccgtaatcgagggtttctcgctcacccttcatgctggggaccgt
tgccttctcgtgggttccaatggcgcagggaagactaccattctgaagatattggggggg
aaacatatggtcgagcccgaaatggttcgtgttcttgggagatctgctttccatgacacc
aacctttctgcttcaggagatttatgttatttggggggtgagtggagaagagatattgct
tttgctggttttgaggtaccgattcagatggatgtctcagcagagaaaatgatatttgga
gtatctggtattgatcatcaaagaagagaagaactcataaaggtattggatattgatcta
tcttggcggatgcacaaggtatcagatggtcagagacggcgagtgcagatctgcatgggc
cttcttaggccatttaaggtcctcctccttgatgagattactgttgacttggatgtgcta
gcaagagctagcattttgaagtttctgaagaaagaatgcctggagcgtcgagcaaccatt
atttacgccacacatatttttgatggtcttgaagattggccgtcacatattgtttatgtt
gctcatggcaagcttcagctagcattgcctatggaggttgtgaaggaagccagtaatttg
tcattaatgagaactgtggagagctggctgaggaaggaaagagatgaagatagaagaaga
aaaggaaggggggctgaaggtcttcctgaatatgacgagtgtagtgatgacaacagggta
actagtgaccctggtcggaaggctgtccaagcaatcaacaatggctgggcagcaggaagg
ctgaattctactatagctggtcaagagaactacttgtttagttccaacagtgtcctaaga
caatga
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integrated database retrieval system
