Novosphingobium capsulatum: U0041_12810
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Entry
U0041_12810 CDS
T10206
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ncp Novosphingobium capsulatum
Pathway
ncp03030
DNA replication
ncp03410
Base excision repair
ncp03420
Nucleotide excision repair
ncp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ncp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
U0041_12810 (ligA)
03410 Base excision repair
U0041_12810 (ligA)
03420 Nucleotide excision repair
U0041_12810 (ligA)
03430 Mismatch repair
U0041_12810 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ncp03032
]
U0041_12810 (ligA)
03400 DNA repair and recombination proteins [BR:
ncp03400
]
U0041_12810 (ligA)
Enzymes [BR:
ncp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
U0041_12810 (ligA)
DNA replication proteins [BR:
ncp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
U0041_12810 (ligA)
DNA repair and recombination proteins [BR:
ncp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
U0041_12810 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
U0041_12810 (ligA)
MMR (mismatch excision repair)
DNA ligase
U0041_12810 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
U0041_12810 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
DNA_ligase_ZBD
BRCT
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
WQD91877
LinkDB
All DBs
Position
complement(2815878..2817971)
Genome browser
AA seq
697 aa
AA seq
DB search
MSDPAGIDPAAMGEAAAANELMRLARQIAYHNRRYHAEDAPEISDAEYDALVRRNAELET
AFPHLIRADSPSRAVGHEVSASPLRKVTHEVRMMSLDNAFTDEEVEEFVARVRRFLALPA
DAPVVMTAEDKIDGLSCSLRYEDGRLVRAATRGDGQVGEDVTANVAHIKDIPQELCSDSG
VEPPAVFEIRGEVYMAKADFLALNAAQEEKGDKVFANPRNAAAGSLRQKDASVTAARPLR
FLAHGWGAASAVPAETQWAMMQQMAAWGVPVSHLLTRCDDTAQMLAHYRSIQAQRADLPY
DIDGVVYKVDSLEWQRRLGFVAKAPRWGMAHKFPAEQAETTVEAIDIQVGRTGKLTPVGR
LAPVLVGGVTVTNVTLHNRDEIGRLGVRVGDRVVLQRAGDVIPQVVENLTREEDRPAYVF
PDHCPECGSEAVAEEGEVDVRCTGGLVCPAQRTERLKHFVSRAALDIEGLGEKTIAEFFA
LGWLESPADIFRLRKRRDDIVGREGWKDKSVDNLLAAIEAKRQPDAARLLFGLGIRHVGA
VTARDLLKRFVTLPALRAVAERAHGGDEEAKADLLGIDGVGPVVVEALGDFFHEPHNIAV
WDDLLGEVSPPDFIVETRASAVAGKTVVFTGKLETMSRDEAKAQAEALGARAAGSVSPKT
DLVVAGPGAGSKLKKAAELGIEVIDEAAWAEIFKAAG
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatccggcaggcatcgatccggcagcaatgggcgaggcggctgccgccaacgaa
ctgatgcggctggcgcgccagattgcctatcacaaccggcgctatcacgccgaagacgcc
ccggaaatttccgatgccgagtatgatgctctggtgcggcgcaatgccgaactggaaacg
gcgtttccgcatctgatccgcgccgacagcccctcgcgcgctgtgggtcacgaggtttct
gcttctcccctgcgcaaggtgacgcacgaggttcgcatgatgagcctcgacaacgccttc
accgacgaggaggtcgaggaattcgtcgcgcgcgtgcgccgcttcctggcgctgccggcc
gatgcaccggtggtgatgacggcggaagacaagatcgacggcctgtcatgctcgctgcgc
tatgaagatggccgcctggtgcgcgcggcgacccgtggtgatggccaggtgggcgaggat
gtgaccgccaatgtagcccatatcaaggacataccgcaggaactttgcagcgattccggt
gtcgaaccgccggccgtgttcgaaatccgcggagaggtctacatggccaaggccgatttc
ctcgcgctcaatgccgcgcaggaggaaaagggcgacaaggtctttgccaacccgcgcaac
gcggctgccggatcgctgcgccagaaggacgcgagcgtgacggccgcgcggcccctgcgg
tttctggcgcatggctggggtgcggccagcgccgtgcccgccgaaacgcagtgggcgatg
atgcagcagatggcggcctggggtgttcccgtgtcacacctgctgacacgctgcgatgat
accgcgcaaatgctggcgcactatcgcagcattcaagcgcaacgcgctgatttaccctat
gatatcgatggcgtggtatacaaggtcgatagcctggaatggcagcgccggctgggcttt
gtcgccaaggcgccgcgctggggcatggcgcacaagtttcccgccgagcaggcggaaacc
acggtggaggcgatcgatatccaggtggggcgcaccggcaagctgacgccggtggggcgc
ttggcgccggtgttggtgggcggggtgaccgttaccaacgtgacacttcacaaccgtgat
gagatcggccggctgggtgtgcgcgtcggtgatcgcgtggtcttgcaacgggctggcgat
gtcatcccgcaagtggttgaaaatctgacacgcgaagaagatcgtccggcttatgtcttt
cccgatcactgcccggaatgcggcagcgaggcggtggccgaagaaggcgaagtggacgtg
cgctgcaccggcgggttggtgtgcccggcgcagcggaccgagcggctcaagcattttgtc
agccgcgccgcgctcgatatcgaagggctgggcgaaaagaccatcgccgaattctttgcg
ctgggctggctggaaagcccggccgatatcttccgcctgcgcaagcggcgtgacgatatt
gtcggtcgcgagggctggaaggacaagtcggtcgacaatctgctcgccgcgatcgaggcc
aagcgccagcccgatgccgcgcgcctgctgttcgggctgggcattcgccacgttggcgcg
gtcaccgcgcgcgacctgttgaagcgcttcgtcacgctgcccgcgctgcgcgccgtggcc
gaacgcgcccatggcggcgatgaagaggccaaggccgatctgctgggcatcgatggtgtt
ggcccggtggtggtggaagcgctgggcgatttcttccacgaaccgcacaacatcgccgtg
tgggacgatctgctgggtgaagtgagcccgcccgatttcatcgtcgaaacccgcgccagc
gccgtcgcgggcaagacggtggtgttcaccggcaagctggaaaccatgagccgcgacgag
gccaaggcccaggccgaggcgctgggcgcgcgggccgctggcagcgtttcccccaagacc
gacctggtcgttgccgggccgggtgcgggcagcaagctcaagaaggcagccgaactgggc
atcgaggtgatcgacgaagcggcctgggcggaaatcttcaaggcagcgggatag
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