Nocardioides coralli: K6T13_12265
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Entry
K6T13_12265 CDS
T08149
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ncq
Nocardioides coralli
Pathway
ncq03030
DNA replication
ncq03410
Base excision repair
ncq03420
Nucleotide excision repair
ncq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ncq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K6T13_12265 (ligA)
03410 Base excision repair
K6T13_12265 (ligA)
03420 Nucleotide excision repair
K6T13_12265 (ligA)
03430 Mismatch repair
K6T13_12265 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ncq03032
]
K6T13_12265 (ligA)
03400 DNA repair and recombination proteins [BR:
ncq03400
]
K6T13_12265 (ligA)
Enzymes [BR:
ncq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K6T13_12265 (ligA)
DNA replication proteins [BR:
ncq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K6T13_12265 (ligA)
DNA repair and recombination proteins [BR:
ncq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K6T13_12265 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K6T13_12265 (ligA)
MMR (mismatch excision repair)
DNA ligase
K6T13_12265 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K6T13_12265 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
Nlig-Ia
PTCB-BRCT
Prot_ATP_ID_OB_C
Auto_anti-p27
DUF7340
DUF7417
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
QZY28251
LinkDB
All DBs
Position
complement(2510894..2513011)
Genome browser
AA seq
705 aa
AA seq
DB search
MTPPAAAPEPAPAEVRDQHRQLVEVVEGARWRYYVLDDPTMSDADFDGRMRELEELEERW
PELRTPDSPTQKVGGAVSTEFTAVDHLRPMESLDNAFSLEELTAWHARLGRDGVTDPALL
CELKVDGLAINLLYEEGRLVRALTRGDGRTGEDVTPNVKTIDAVPHRLTVADGFPVPALV
EVRGEVFLPVEAFERLNETMADAGKPVFANPRNAAAGSLRQKDPRVTATRALGMVCHGIG
HREGFEPTSQSTAYDALQAWGLPTSDRVRVLGSLAEVQDYIDHYGEHRHAVDHEIDGVVV
KVDDVSLQRRLGSTSRAPRWAIAYKYPPEEVNAKLLAIEVNTGRTGRVTPFGVMEPTRVA
GSTVERATLHNAHEVRRKDVRPGDTVVLRKAGDVIPEIVGPVLALRPDGLAEWVMPTACP
ACGTELVQQKEGDKDLRCPNHRECPAQLLDRVFHVAGRGAFDIEGLGSEAAHALLEAGVI
TDEGDVFDLDEAKLLRTELFTRAAKKTEVDRATDGRVLSANGERLLANLDRAKDVPLWRV
IVALSIRHVGPTAARALATQFGSMQAVRDADETTLADTDGVGPTIAAAVRAWFDGEGSDW
HNAIVDKWAAAGVTMEDERDESVSRTLEGLTIVATGTLEDFTRDSVKEAIIVRGGKASGS
VSKKTDYVVVGDNAGSKADKAEQLGVTTLDEAAFKRLLAGGPEAV
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgaccccacccgcggccgcccccgagccggcccccgccgaggtccgtgaccagcaccga
cagctcgtcgaggtggtcgagggggcgcgctggcgctactacgtgctcgacgacccgacg
atgtccgacgccgacttcgacggccggatgcgcgagctcgaggagctggaggagcgctgg
cccgagctgcggacccccgacagcccgacccagaaggtcggcggcgcggtcagcacggag
ttcaccgcggtcgaccacctgcggccgatggagtcgctcgacaacgccttctcgctcgag
gagctgaccgcgtggcacgcgcggctggggcgtgacggggtgaccgacccggcgctgctg
tgcgagctcaaggtcgacggcctggcgatcaacctgctctacgaggaggggcggctggtc
cgagccctcacccgaggcgacggccggaccggcgaggacgtcacgcccaacgtcaagacc
atcgacgccgtcccccaccggctgaccgtggccgacgggttcccggtgccggccctggtc
gaggtccgcggcgaggtgttcctccccgtcgaggccttcgagcgcctcaacgagacgatg
gccgacgccggcaagccggtcttcgccaacccccgcaacgccgcagcgggctcgttgcgc
cagaaggacccgcgggtcacggccacccgggcgctcggcatggtgtgccacggcatcggc
caccgcgaggggttcgagccgaccagccagtccacggcgtacgacgccctgcaggcgtgg
ggtctccccacctccgaccgggtgcgggtgctggggtcgctcgccgaggtccaggactac
atcgaccactacggcgagcaccgtcacgccgtcgaccacgagatcgacggggtggtcgtc
aaggtcgacgacgtgtccctccagcggaggctcggctccacgagccgcgcgccgcggtgg
gcgatcgcctacaagtacccacccgaggaggtcaacgccaagctgctcgcgatcgaggtc
aacaccgggcgcaccggccgggtgacccccttcggggtgatggagccgacccgggtcgcc
gggtccacggtcgagcgagccacgctccacaacgcccacgaggtacgccggaaggacgtg
cggccaggtgacacggtcgtgctccgcaaggccggcgacgtgatccccgagatcgtcgga
ccggtgctcgccctgcgcccggacggactcgcggagtgggtgatgccgactgcctgcccg
gcgtgcggcaccgagctggtccagcagaaggagggcgacaaggacctgcggtgccccaac
caccgcgagtgccccgcccagctgctcgaccgggtcttccacgtcgcgggccggggtgcc
ttcgacatcgagggcctcggcagcgaggcggcccacgccctgctggaggcgggggtcatc
accgacgagggagacgtcttcgacctcgacgaggccaagctgctccgcaccgagctgttc
acccgggccgcgaagaagaccgaggtcgaccgcgccaccgacggcagggtgctctcggcc
aacggggagcggctgctcgccaacctcgaccgggccaaggacgtgccgctgtggcgggtg
atcgtggcgctgtcgatccggcacgtcgggccgaccgccgcccgggccctcgccacgcag
ttcgggtcgatgcaggcggtgcgcgacgccgacgagacgacgctcgccgacaccgacggc
gtgggtccgacgatcgcggctgccgtgcgggcctggttcgacggggagggctccgactgg
cacaacgcgatcgttgacaagtgggccgcggccggggtgaccatggaggacgagcgcgac
gagtccgtgagccgcacgctcgaggggctcacgatcgtcgccaccggaaccctggaggac
ttcacgcgcgactcggtcaaggaggccatcatcgtgcgaggcggcaaggcgtcggggtcg
gtgtcgaagaagaccgactacgtcgtggtgggcgacaacgcggggtcgaaggccgacaag
gccgagcagctcggggtgacgacgctcgacgaggccgcgttcaagcgcctgctggccggt
ggccctgaggcggtctga
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integrated database retrieval system
