Nostoc carneum: NIES2107_05920
Help
Entry
NIES2107_05920 CDS
T10358
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ncw Nostoc carneum
Pathway
ncw03030
DNA replication
ncw03410
Base excision repair
ncw03420
Nucleotide excision repair
ncw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ncw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NIES2107_05920
03410 Base excision repair
NIES2107_05920
03420 Nucleotide excision repair
NIES2107_05920
03430 Mismatch repair
NIES2107_05920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ncw03032
]
NIES2107_05920
03400 DNA repair and recombination proteins [BR:
ncw03400
]
NIES2107_05920
Enzymes [BR:
ncw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NIES2107_05920
DNA replication proteins [BR:
ncw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NIES2107_05920
DNA repair and recombination proteins [BR:
ncw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NIES2107_05920
NER (nucleotide excision repair)
GGR (global genome repair) factors
NIES2107_05920
MMR (mismatch excision repair)
DNA ligase
NIES2107_05920
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NIES2107_05920
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
BAY28760
LinkDB
All DBs
Position
726956..728992
Genome browser
AA seq
678 aa
AA seq
DB search
MIQSQPETKRVEELRRLLQQASYAYYVLDAPIMEDAVYDQLYRELQQLEIQYPELITPDS
PTQRVGERPATQFTSVRHNIPLYSLENAFNIDELQSWDQRWRRQAPKIAAAEYVSELKID
GSAIALTYQNGILTRGATRGDGVMGEDITQNVRTIRSIPLRLNFDGLEILEKVEVRGEAF
LPLDVFKQINEERQKAGEQLFANPRNAAAGTLRQLDSKIVARRRLDFFAYTLHIPGRDDA
SIANTQWEALELLQKMGFRVNPNHKLCPSLAEVAEYYNYWDTERLNLPYMTDGVVVKLNS
FKLQEQLGFTQKFPRWAVALKYAAEEAPTRVENIAVNVGRTGALTPLAEMRPVQLAGTTV
SRATLHNSDRIAQLDIRIGDTVIVRKAGEIIPEVVRVLTELRPPNTEPFIMPTNCPVCGQ
QVVRELGEAVTRCVNASCAAILKGAIEHWVSRDALDIKGMGEKLVHQLVDKGLVHSVADL
YDLTEEKLYALERMGQKSAQKLIDAIAQSKNQPWSRVLYGLGIRHVGSVNAQLLTEKFSD
VEKITQARQSDIAGIYGIGVEIAESVHQWFQIDANQTLISRLQAAGLQLANSAETPTITD
SNPNFAGKTFVVTGTLPTLKRDEAKALIQKAGGKITDSVSKKTDYLVVGEDAGSKLAKAE
ALGITQLTEAQLLQMLEA
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgatacagagtcagccagaaaccaagcgtgtagaagaactacgccgattgttgcagcaa
gctagttatgcttattacgtattagatgcacccattatggaggatgcagtctatgaccag
ctatatcgggaattgcaacaactagaaatccagtatccagaattaattacaccagatagt
cctactcagcgcgtgggtgagagacctgcaacacagtttacttcggtgcggcacaatatc
ccgctgtacagtctggagaatgcttttaatattgatgaattgcaatcatgggatcagcgc
tggcggcgacaagcaccaaaaattgcagccgcagaatatgtctcagaactgaaaattgat
ggttctgcgatcgcacttacctatcaaaatggtatcctcaccagaggcgcaactcggggt
gatggggtgatgggggaagatatcacccaaaatgtgcggacaattcgctcaattcccttg
cgcttaaattttgatggcttagaaattttagaaaaggtggaagtcaggggcgaagcgttt
ttacccttagatgtatttaaacaaattaacgaagaacggcaaaaagccggcgaacagtta
tttgctaatccccgcaatgccgcagctggtacactcagacaattagactcgaaaattgtt
gcccgcaggcgtttagatttctttgcttatacgttgcatattcctggtagagatgatgct
agtattgccaatactcaatgggaagctttggaattgttacaaaagatgggcttccgggtg
aaccccaaccataagctatgtccttctttagcggaagttgctgaatactataactattgg
gatacagaaaggctgaatttaccctacatgactgatggggtagtcgtaaagcttaattcc
tttaagcttcaggaacagctaggatttacgcaaaagtttcctcgctgggcggtggcgttg
aagtatgcagccgaagaagcacctacccgtgtagaaaatattgcagtgaatgttggtaga
acaggcgctttaaccccattagcagaaatgcgccccgtacaattagcaggaacaacagtt
tcccgcgctaccttacataatagcgatcgcatcgcccaattagacatccgcatcggtgat
actgtaattgttcgcaaagctggggaaattattccagaggtggtacgagtactcacagaa
cttcgtcccccaaacaccgaaccctttatcatgccaaccaattgcccagtttgcggtcag
caagtagtgcgggagttgggtgaagccgtgactaggtgtgttaatgcttcctgcgctgct
atcctcaaaggtgcaattgaacattgggtcagccgcgatgccttagatattaaaggtatg
ggcgaaaagctagtacatcaactcgtagataaaggtttggtgcattccgtagccgattta
tatgacttgacagaagaaaaattatatgcattggaaaggatggggcagaaatcagcgcag
aagttaattgatgcgatcgcccaatcaaaaaatcaaccttggtcaagagtattgtatggt
ttaggtatccgtcatgttggcagcgtcaatgctcaactattaactgagaaattttctgat
gttgagaagataactcaagccagacagtcagatattgctggaatttatggtattggtgta
gaaattgcagaatcagtacaccagtggtttcagattgatgctaatcaaactttgatttct
cgcctccaagcagctggtttgcaattagcaaattctgcagaaacaccaacaattactgat
agtaatcccaactttgcaggcaaaacctttgtagttacaggtactttaccaactttaaaa
agagatgaagccaaagctttaattcaaaaagctggcggtaaaattacagattccgtgagt
aagaaaacagattatttagtagtgggagaagatgctggttctaagttagcgaaagccgaa
gctttaggtattacgcagttaacagaagctcagttattgcagatgttagaagcttaa
DBGET
integrated database retrieval system
