Nocardia cyriacigeorgica: NOCYR_3998
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Entry
NOCYR_3998 CDS
T01756
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ncy
Nocardia cyriacigeorgica
Pathway
ncy03030
DNA replication
ncy03410
Base excision repair
ncy03420
Nucleotide excision repair
ncy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ncy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NOCYR_3998 (ligA)
03410 Base excision repair
NOCYR_3998 (ligA)
03420 Nucleotide excision repair
NOCYR_3998 (ligA)
03430 Mismatch repair
NOCYR_3998 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ncy03032
]
NOCYR_3998 (ligA)
03400 DNA repair and recombination proteins [BR:
ncy03400
]
NOCYR_3998 (ligA)
Enzymes [BR:
ncy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NOCYR_3998 (ligA)
DNA replication proteins [BR:
ncy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NOCYR_3998 (ligA)
DNA repair and recombination proteins [BR:
ncy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NOCYR_3998 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NOCYR_3998 (ligA)
MMR (mismatch excision repair)
DNA ligase
NOCYR_3998 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NOCYR_3998 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
Nlig-Ia
HHH_5
PTCB-BRCT
HHH
UPF0758_N
Bac_small_YrzI
Motif
Other DBs
NCBI-ProteinID:
CCF64759
UniProt:
H6R740
LinkDB
All DBs
Position
complement(4403872..4405983)
Genome browser
AA seq
703 aa
AA seq
DB search
MDAAAPAAESASSQQRQQWQQLADEVREHQFRYYVRDAPIISDGEFDALFQRLLAMEEQH
PDLRTPDSPTQLVGGGFATDFTAVDHLERMLSLDNAFDFDELRSWAARVEAETGPGLHYL
CEVKIDGVALNLVYEKGKLVRGATRGDGRTGEDVTLNARTIDDIPRELTAHPDHPIPDLL
EVRGEVYFRLEDFETLNAAIVAEGKPPYANPRNTAAGSLRQKDPSVTARRRLRMICHGFG
RIEGYTPSSQHEAYNALAAWGLPVSTHTKLVQGIDAVLERVAYWGEHRHDIEHEIDGLVV
KVDEMALQRRLGSTSRAPRWAIAYKYPPEEATTKLLDIQVNVGRTGRVTPFAVMEPVAIA
GSTVAMATLHNASEVQRKGVLIGDTVTIRKAGDVIPEVLGPVVDARTGDERAFVMPTHCP
ECGTELAPEKEGDADIRCPNQQNCPAQLRERVFHMAGRGAFDIEALGYEAAVDLLKSGAI
TDEGDLFDLTEERLLTTSLFVNKNGTLSTNGRRLLDNLAAAKDRPLWRVLVGLSIRHVGP
TAARALAAEFGSLERISQASVEELAATDGVGPTIAVAVTQWFTVDWHRAIVDKWRAAGVR
MEDERDESIERNLEGLSIVVTGSLEGFSRDGAKEAILVRGGKAAGSVSKKTAFVVVGESP
GSKAAKAEELGVPILDEEGFRTLLESGPDAVRAGSSEIETPAE
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggatgccgccgcgccggctgccgagtcggcgagctcgcagcagcgtcagcagtggcag
cagctggccgacgaggtgcgcgagcatcagttccgctactacgtgcgtgacgcgccgatc
atctccgacggcgagttcgacgcgctgttccagcggctgctggccatggaggagcagcat
ccggatctgcgcacacccgactcaccgacccagttggtcggcggcggtttcgccaccgac
ttcaccgccgtcgatcatctcgaacgcatgctctcgctggacaacgcgttcgatttcgac
gagctgcgctcctgggccgcgcgggtggaggccgaaaccgggcccggcctgcactatctg
tgcgaggtgaagatcgacggtgtcgcgctgaacctggtctacgagaagggcaagctggtg
cgcggcgccacccgcggcgacgggcgcaccggtgaggacgtcaccctcaatgcccgcacc
atcgacgacatcccgcgcgaactcaccgcccaccccgaccatccgatcccggatctactc
gaggtccgcggcgaggtgtatttccggctggaagatttcgagacgctcaacgccgccatc
gtcgccgaaggtaaaccgccgtacgcgaatccgcgcaataccgctgccggttcgctgcgg
cagaaggatccctcggtcaccgcgcggcggcggctgcggatgatctgccacggtttcggc
cgcatcgagggctacacgcccagctcccagcacgaggcctacaacgcgctcgccgcctgg
gggcttccggtatccacgcacaccaagctggtgcaggggatcgacgcggtgctggagcgg
gtggcctactggggcgagcaccgccacgatatcgagcacgagatcgacggcctggtggtc
aaggtcgacgagatggcgttgcagcggcgtctcgggtccacctcgcgcgctccgcgctgg
gcgatcgcgtacaagtatccgcccgaggaagccaccaccaagctgctcgatatccaggtc
aatgtcggccgcaccgggcgggtcaccccgttcgcggtgatggagccggtcgccatcgcc
gggtccaccgtcgcgatggccaccctgcataacgcctcggaagtgcagcgcaagggcgtg
ctgatcggcgacaccgtcaccatccgcaaggcaggcgatgtgatccccgaggtgctcggc
ccggtggtcgacgcccgcaccggcgacgaacgcgccttcgtgatgcccacccactgcccg
gaatgcggcaccgaactcgcgccggaaaaggagggcgacgccgacatccgctgcccgaac
cagcagaactgcccggcgcagctgcgcgagcgggtgttccatatggccgggcgcggtgcc
ttcgatatcgaggcgctcggctacgaggcagccgtcgacctgctcaaatccggtgccatc
accgatgagggcgatctgttcgacctcaccgaggaacgcctgctcaccacctcgctgttc
gtcaacaagaacggtaccctgtccaccaacggccgccggctgctcgacaatctcgccgcg
gccaaggaccgcccgctgtggcgggtgctggtggggctgtccatccgccacgtcggcccc
acagccgcccgcgcgctcgccgccgagttcggcagcctggagcggatcagccaggcctcg
gtcgaggaactggcggccaccgacggcgtcggccccaccatcgccgtcgcggtgacgcaa
tggttcaccgtcgactggcatcgcgccatcgtcgacaaatggcgcgccgccggcgtgcgg
atggaagacgaacgcgacgaatccatcgaacgcaacctcgagggcctgtccatcgtcgtc
accggctcgctggaaggcttctcccgcgacggcgccaaggaggcgattctggtgcgcggc
ggtaaggccgccggttcggtgtcgaagaaaacggccttcgtggtcgtcggcgaatcaccc
ggatccaaggccgccaaggccgaggaactgggtgtgcccatcctcgacgaagagggcttc
cgcaccctgctggaatcgggccccgacgcggtgcgggccggctcgagtgagatcgagaca
cccgccgaataa
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