Nocardiopsis dassonvillei: Ndas_0160
Help
Entry
Ndas_0160 CDS
T01248
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nda
Nocardiopsis dassonvillei
Pathway
nda03030
DNA replication
nda03410
Base excision repair
nda03420
Nucleotide excision repair
nda03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nda00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ndas_0160
03410 Base excision repair
Ndas_0160
03420 Nucleotide excision repair
Ndas_0160
03430 Mismatch repair
Ndas_0160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nda03032
]
Ndas_0160
03400 DNA repair and recombination proteins [BR:
nda03400
]
Ndas_0160
Enzymes [BR:
nda01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Ndas_0160
DNA replication proteins [BR:
nda03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Ndas_0160
DNA repair and recombination proteins [BR:
nda03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Ndas_0160
NER (nucleotide excision repair)
GGR (global genome repair) factors
Ndas_0160
MMR (mismatch excision repair)
DNA ligase
Ndas_0160
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Ndas_0160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
HHH_8
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ADH65610
UniProt:
D7AU52
LinkDB
All DBs
Position
1:199084..201411
Genome browser
AA seq
775 aa
AA seq
DB search
MSAPDTTTDIPDEVRARHTELCQELDDHSYRYYLGTPVISDAEYDTLMRELVGIEDSYPA
LATQDSPTQKVGAPISVDFAAVEHLVRMESLGNAFDVDELNAWADRASAEVPVNGYLCEL
KIDGLAVDLVYEKGRLVRAATRGDGRVGEDITLNVRTIGVVPERLDESVRPAPELLEVRG
EVFLPVEDFGKLNERITASGEHTPFANPRNAAAGSLRQKDPRVTATRPLSMIVHGVGAYS
PAKDGGGEVAFTSQSQAYRLLGEWGLPLSDRYRVVTTMDEVREYVAHYAAHRHEPAYEID
GIVIKVDDFALQRRLGSTSRVPRWAIAYKYPPEEVTTRLLDIKVGVGRTGRVTPYGVMEP
VVVAGSEVEFATLHNAREVERKGVLIGDTVVLRKAGDVIPEIVAPVLDRRDGTERAFAMP
ESCPECGTTLGQQKEGDVDLRCPNARSCPGQLRERLFFVASRKALDIEALGYVAATALTQ
PLEPARPPVRDEGDLFDLTVDMLLPIRTHVLDPDTTEPKTDPKTGEPKVVSFFANKKGEP
KKTVEKLFEQLEEAKSKPLWRVLVALSIRHVGPRAAEDLARHFRSMDAIRAASEEELAAV
DGVGPTIAASIREWFSVDWHAEIVRKWADAGVRMEDEDDGSRPRHLEGVTVVVTGSLEGF
SRDGAKEAIAERGGRATASVSKKTGFVVVGDSPGSKYDKAVKLGVPVLDEEGFRVLLEAG
PEAAEAMRVNPAPREPGTEDAEAGATGTEGATGTDAVPGTSETVADAEEAVRDEA
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcgcccgacaccaccaccgacatccccgacgaggttcgcgcccggcacaccgag
ctgtgccaggaactggacgaccacagttaccggtactacctgggcacaccggtgatctcc
gacgccgagtacgacaccctcatgcgtgagctggtcggcatcgaggactcctaccccgcc
ctggccacccaggactcgcccacgcagaaggtcggcgcgcccatcagcgtcgacttcgcc
gcggtcgagcacctggtgcggatggagagcctgggcaacgccttcgacgtcgacgagctc
aacgcctgggccgaccgggccagcgccgaggtgcccgtcaacggctacctgtgcgagctc
aagatcgacggcctggccgtggacctggtgtacgagaagggccgcctcgtgcgcgccgcc
acccgcggcgacggccgcgtcggcgaggacatcaccctcaacgtgcgcaccatcggggtc
gtccccgagcgcctggacgagagcgtgcgccccgcccccgagctgctggaggtgcggggg
gaggtcttcctgccggtggaggacttcggaaaactcaacgagcgcatcaccgcctcgggc
gagcacacccccttcgccaacccccgcaacgccgccgccgggtcgctgcgccagaaggac
ccccgcgtcaccgccacccggccgctgtcgatgatcgtgcacggcgtgggcgcctactct
ccggcgaaggacggcggcggggaggtggccttcaccagccagtcgcaggcctaccggctg
ctgggggagtgggggctgccgctcagcgaccgctaccgggtcgtcaccaccatggacgag
gtccgcgagtacgtggcccactacgcggcccaccgccacgagcccgcctacgagatcgac
ggcatcgtcatcaaggtcgacgacttcgccctccagcggcgcctgggctccaccagccgc
gtcccgcgctgggcgatcgcctacaagtacccgcccgaggaggtcaccacccgcctgctc
gacatcaaggtgggcgtgggccgtaccgggcgcgtcaccccctacggggtcatggagccg
gtggtcgtggccgggtccgaggtcgagttcgccaccctgcacaacgcgcgcgaggtcgag
cgcaagggcgtgctcatcggcgacaccgtcgtgctgcgcaaggcgggcgacgtcatcccc
gagatcgtcgccccggtgctcgaccgccgcgacggcaccgagcgggccttcgccatgccc
gagtcctgccccgagtgcggcaccacgctcggccagcagaaggagggcgacgtcgacctg
cgctgccccaacgcccgctcctgcccgggccagctgcgcgagcgcctgttcttcgtggcc
agccgcaaggccctggacatcgaggcgctgggctacgtggccgccaccgccctcacccag
ccgctggagcccgcccggccgccggtgcgcgacgagggcgacctgttcgacctcaccgtc
gacatgctgctgcccatccgcacccacgtgctcgaccccgacaccaccgagcccaagacc
gaccccaagaccggcgagcccaaggtggtgtccttcttcgccaacaagaagggcgagccc
aagaagacggtcgagaagctcttcgagcagctggaggaggccaagtccaagccgctgtgg
cgtgtgctggtggcgctgtccatccggcacgtgggtccgcgcgcggcggaggacctggcc
cgccacttccgctccatggacgccatccgcgcggccagcgaggaggagctggctgcggtc
gacggcgtcggcccgaccatcgccgcctccatccgcgagtggttctcggtggactggcac
gccgagatcgtccgcaagtgggccgacgccggggtgcgcatggaggacgaggacgacggc
tccaggccgcgccacctggagggggtcaccgtggtggtgaccggatccctggagggcttc
agccgggacggggccaaggaggcgatcgccgagcgcggcggccgggccacggcgtcggtg
tccaagaagacgggtttcgtggtggtcggcgacagccccggctccaagtacgacaaggcc
gtcaagctgggggtgccggtcctggacgaggagggcttccgcgtccttttggaggccggt
cccgaggcggccgaggccatgcgggtcaaccccgcgccccgggagcccgggaccgaggac
gccgaggccggggccacggggaccgagggcgcgaccgggaccgacgccgtccccggaacg
tccgaaaccgtcgccgacgccgaggaggccgtcagggacgaggcctga
DBGET
integrated database retrieval system
