Nitrospira defluvii: NIDE2036
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Entry
NIDE2036 CDS
T01281
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nde
Nitrospira defluvii
Pathway
nde03030
DNA replication
nde03410
Base excision repair
nde03420
Nucleotide excision repair
nde03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NIDE2036 (ligA)
03410 Base excision repair
NIDE2036 (ligA)
03420 Nucleotide excision repair
NIDE2036 (ligA)
03430 Mismatch repair
NIDE2036 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nde03032
]
NIDE2036 (ligA)
03400 DNA repair and recombination proteins [BR:
nde03400
]
NIDE2036 (ligA)
Enzymes [BR:
nde01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NIDE2036 (ligA)
DNA replication proteins [BR:
nde03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NIDE2036 (ligA)
DNA repair and recombination proteins [BR:
nde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NIDE2036 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NIDE2036 (ligA)
MMR (mismatch excision repair)
DNA ligase
NIDE2036 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NIDE2036 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
CBK41756
UniProt:
D8PEU7
LinkDB
All DBs
Position
complement(1953279..1955306)
Genome browser
AA seq
675 aa
AA seq
DB search
MSNQPMPHQTAEQRIADLRRQIRHHDHLYYTKDRPEISDAEYDRLFRELVDLETAHPDLV
TGDSPTQRVGAPPLDELTKVSHEKPMLSLDSITDQDDVRAFDARMKRELETDQIVYTAEP
KFDGLSVELVYDRGAFVRGATRGDGMVGEDVTINLRTIRALPLQLDPQPSLPAHLVVRGE
VYMRLDEFQVLNRRMTERGEEAFANPRNAAAGSLRQLDSRITASRPLTLTCYDIMAISGT
APPTHWDELDALAAWGLPVPEHRQRCRSIDEVLSFQQATDAMRDSLPFEIDGVVVKLDRR
TWQDQLGSKSRSPRWAIAYKFAPRKEITVIQDIAVSVGRTGTLTPLALLKPVEVGGVTIS
RATLHNADEVARKDVRVGDTVKVERAGDVIPAIAERVPVPGETRQEPFVMPDHCPVCGSA
VAREGAYFYCTGQTVCVAQLKGAIEHFASKSALDIDGMGKKTIAQLVDVGLVRDLADLYS
LTKDQILTLEGFADRSANLLLESIERSKSVSLDRLLMGLGIRQVGQHIARVLAKQFGTLS
KLMSATQEDLLQVREIGPEISASLTSFFSEERNRAVIARLIERGLTIAPPTTENTTGSQH
LAGKTFVFTGGLEGYSRDQAKELVEQQGGQVSSSVSKKASFVVAGTDPGSKLDQAQKLGV
RILTEAEFTALVRPE
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaatcagcccatgcctcatcagacagccgaacaacgaatcgccgatcttcgccgt
caaattcgccatcacgaccacctctactacacgaaggaccggccggagatttccgacgcg
gaatacgaccggctctttcgcgagctcgtcgacctcgaaaccgcccatcccgacctggtc
accggcgactcgcccacccaacgagtcggcgcaccaccgctggacgaactcaccaaagtc
tcccacgagaaaccgatgctgagtctcgactccatcaccgatcaggacgatgtccgggcc
ttcgatgcacggatgaagcgggagctggaaaccgaccagatcgtctacacggcggagccg
aaattcgatggcctgtcggtggaactggtttacgaccggggcgccttcgtccgcggcgcg
actcgtggagacggtatggtcggcgaagatgtgacgatcaatctccggacgatccgcgcc
ctgccgctacagcttgatccccagccctccctgcccgcgcacctggtcgtgcgcggagaa
gtctacatgcgtctggatgaatttcaggtgctcaaccgtcgcatgacggagcgcggcgag
gaagcctttgcgaacccgcgcaatgccgcagcaggatcgttgcgccagttggacagccgc
atcaccgcatctcgccccttgaccttgacctgctatgacatcatggcgatatccggcaca
gccccccccacccattgggatgagttggacgcactggccgcctgggggcttcctgttccc
gaacaccgacaacggtgccgctcgattgacgaagtcctctcgttccaacaggccaccgat
gcgatgcgggactcgcttccgtttgaaatcgacggcgtggtcgtcaaactcgaccgccgg
acgtggcaggaccagttgggcagcaaatcccgcagcccccgttgggccatcgcctacaag
tttgcaccccgcaaagaaatcacggtgattcaagacatcgccgtctcggtcggtcgtacc
ggtaccctgacgccgttggccctgctgaaaccggtagaggtcggaggcgtcacgatcagt
cgtgcgactcttcacaatgcggatgaggtggcgcgaaaagacgtccgcgtcggtgacacg
gtcaaggtggaacgcgccggtgacgtgatccccgcgattgccgaacgggtcccggttccc
ggagagacgagacaggaaccgttcgtgatgccggaccactgcccggtctgcggatcggct
gtggctcgcgagggagcttatttctactgcaccggccagaccgtctgcgtcgcgcaactg
aagggcgccatcgaacacttcgcctcgaagagcgcgttggatatcgacgggatgggaaag
aaaacgatcgcccaactggtcgatgtggggttggttcgggacctggccgatctctacagc
ctcaccaaagaccagatactcacgctggagggctttgccgaccgttcggcgaacctgctg
ctggaatcgattgaacgaagcaaatccgtctcactggaccggctgttgatggggctgggc
atcagacaggtggggcagcatatcgcccgcgtgctggcgaaacagttcggcaccctctcg
aagctgatgtcggcgacgcaggaggacttgctgcaggtgcgcgaaatcggcccggagatt
tctgccagcctcacgtcgttcttcagcgaagaacggaaccgggccgtgattgcccgcctg
atcgaacggggtctgacgattgctcccccgaccactgagaacaccaccggcagccaacat
ctggccggtaagacattcgtttttaccggtgggctcgaaggctacagccgcgaccaagcc
aaagaattggtggaacagcaggggggacaagtctcgtcgagcgtcagcaaaaaggcatcg
tttgttgtggcagggaccgatccggggtcgaaactcgaccaggcacagaaactgggggtg
cggattctgacggaagcggaatttaccgctctagtgaggcctgagtga
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