Nocardioides dokdonensis: I601_2419
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Entry
I601_2419 CDS
T04431
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ndk
Nocardioides dokdonensis
Pathway
ndk03030
DNA replication
ndk03410
Base excision repair
ndk03420
Nucleotide excision repair
ndk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ndk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I601_2419 (ligA)
03410 Base excision repair
I601_2419 (ligA)
03420 Nucleotide excision repair
I601_2419 (ligA)
03430 Mismatch repair
I601_2419 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ndk03032
]
I601_2419 (ligA)
03400 DNA repair and recombination proteins [BR:
ndk03400
]
I601_2419 (ligA)
Enzymes [BR:
ndk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I601_2419 (ligA)
DNA replication proteins [BR:
ndk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I601_2419 (ligA)
DNA repair and recombination proteins [BR:
ndk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I601_2419 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I601_2419 (ligA)
MMR (mismatch excision repair)
DNA ligase
I601_2419 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I601_2419 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
Prot_ATP_ID_OB_C
DUF1990
Auto_anti-p27
DUF7417
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ANH38837
UniProt:
A0A1A9GKG8
LinkDB
All DBs
Position
2519645..2521744
Genome browser
AA seq
699 aa
AA seq
DB search
MSDPTPAGDAAREEHRRLAEEVEDARWRYYVLDSPTVDDADFDARVRRLEELEEAHPELR
TPDSPTQKVGGAVSTQFTAVDHLERMESLDNAFSFEELQAWHERLRRDGVDDPALLCELK
VDGLAINLLYEDGRLVRALTRGDGRTGEDVTPNVKTIDTIPHRLTGTEQFPVPELVEVRG
EVFLPVAAFERLNEAMTEAGKPVFANPRNAAAGSLRQKDPRVTATRALGMVCHGIGARRG
FEPRSQSQAYDALGAWGLPTSTRATVLATLGEVEALVAHHGEHRHDVEHEIDGVVVKVDD
VSLQRRLGSTSRAPRWAIAFKYPPEEVNTELLDIRVNVGRTGRVTPYGVMVPTRVAGSTV
ENATLHNAHEVRRKDVRPGDTVILRKAGDVIPEILGPVLALRPEGLEPWVMPTHCPACGT
ELAEQKEGDKDLRCPNHEQCPAQVRERVFHVAGRGAFDIEGLGYEAASALLDAGVITNEG
DVFDLTVDDLLRTELFTRAAKRTEADTATDGRVLSANGQRLLDHLQQAKQVPLWRVLVAL
SIRHVGPTAARALAQEFGSMARIREAAEEQLAAAEGVGPTIAEAVIEWFGVEWHRRIVER
WDAAGVTMQDERDESVPRTLEGLTIVVTGSLVDFSRDSAKEAILARGGKAAGSVSKKTDY
VVVGDNAGSKAEKAEQLGVPVLDEDGFKALLEQGPAQDS
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaccccaccccggccggagacgcggcccgcgaggagcaccgcaggttggcggag
gaggtggaggacgcgcgctggcgctactacgtgctggacagccccaccgtggacgacgcc
gacttcgacgcccgggtgcgccggctggaggagctggaggaggcccaccccgagctgcgc
accccggactcgccgacgcagaaggtcgggggagcggtctcgacgcagttcacggccgtc
gaccacctggagcggatggagagcctcgacaacgccttctccttcgaggagctgcaggcc
tggcacgagcggctgcgccgcgatggcgtggacgacccggcgctgctgtgcgagctgaag
gtcgacgggctcgcgatcaacctgctctacgaggacgggcgcctggtgcgggccctgacc
cgcggcgacggtcgcaccggcgaggacgtcacgcccaacgtcaagacgatcgacacgatc
ccgcaccggctcaccggcaccgagcagttcccggtgcccgagctcgtcgaggtgcgcggc
gaggtcttcctgccggtggccgcgttcgagcgtctcaacgaggcgatgaccgaggccggc
aagccggtcttcgccaacccccgcaacgccgccgccggctcgctgcgccaaaaggacccc
cgggtcaccgcgacccgcgcgctgggcatggtctgccacggcatcggggcccggcgcggc
ttcgagccccgctcccagtcccaggcgtacgacgccctgggagcctggggcctgcccacc
agcacccgggccacggtgctggccacgctgggcgaggtcgaggcgctggtcgcccaccac
ggcgagcaccgccacgacgtggagcacgagatcgacggcgtcgtggtcaaggtcgacgac
gtcagcctccagcgtcgtctcggctccacgagccgggcgccccgctgggcgatcgcgttc
aagtacccgcccgaggaggtcaacaccgagctgctcgacatccgggtcaacgtgggccgc
accggccgcgtcacgccgtacggcgtcatggtgccgacccgggtggccggctcgacggtc
gagaacgccaccctgcacaacgcccacgaggtgcgccgcaaggacgtgcgccccggcgac
acggtgatcctgcgcaaggcgggggacgtgatcccggagatcctggggccggtgctggcg
ctgcgccccgagggcctggagccgtgggtgatgcccacccactgccccgcctgcggcaca
gagctggccgagcagaaggagggcgacaaggacctgcgctgcccgaaccacgagcagtgc
cccgcccaggtgcgggagcgggtcttccacgtcgcgggtcgcggtgccttcgacatcgag
ggactcggctacgaggccgcctcggcgctgctcgacgccggcgtgatcaccaacgagggc
gacgtcttcgacctcaccgtcgacgacctgctgcgcaccgagctgttcacccgcgccgcc
aagaggaccgaggccgacaccgcgaccgacggccgggtgctctcagccaacgggcagcgg
ctgctcgaccacctgcagcaggccaagcaggtgccgctgtggcgggtgctcgtggcgttg
tcgatccgccacgtcggcccgaccgcggcgcgcgccctggcccaggagttcggctcgatg
gcgcggatccgcgaggccgccgaggagcagctggcggcggcggagggggtcggccccacg
atcgccgaggccgtcatcgagtggttcggcgtcgagtggcaccgcaggatcgtcgagcgg
tgggacgcggccggggtcaccatgcaggacgagcgcgacgagtcggtgccgcgcaccctg
gaggggctcacgatcgtggtcaccggctccctggtcgacttcagtcgcgactccgccaag
gaggcgatcctggcccgcggcggcaaggcggcgggatcggtgtcgaagaagaccgactac
gtcgtggtcggcgacaacgccggctccaaggccgagaaggccgagcagctcggcgtgccg
gtcctcgacgaggacggcttcaaggcgctgctggagcaggggcccgctcaggactcgtag
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