Nonlabens dokdonensis: DDD_3608
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Entry
DDD_3608 CDS
T02441
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ndo
Nonlabens dokdonensis
Pathway
ndo03030
DNA replication
ndo03410
Base excision repair
ndo03420
Nucleotide excision repair
ndo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ndo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DDD_3608
03410 Base excision repair
DDD_3608
03420 Nucleotide excision repair
DDD_3608
03430 Mismatch repair
DDD_3608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ndo03032
]
DDD_3608
03400 DNA repair and recombination proteins [BR:
ndo03400
]
DDD_3608
Enzymes [BR:
ndo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DDD_3608
DNA replication proteins [BR:
ndo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DDD_3608
DNA repair and recombination proteins [BR:
ndo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DDD_3608
NER (nucleotide excision repair)
GGR (global genome repair) factors
DDD_3608
MMR (mismatch excision repair)
DNA ligase
DDD_3608
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DDD_3608
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
HHH_8
Auto_anti-p27
Zn_Ribbon_TF
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
AGC78735
UniProt:
L7WAM9
LinkDB
All DBs
Position
complement(3901598..3903652)
Genome browser
AA seq
684 aa
AA seq
DB search
MSPKEQIQSLRDELREHNYNYYVNDNPTISDFEFDKKLEQLKTLEAAHPEFYDSTSPSVR
VGGEVTKNFNTVKHINRMYSLDNSYSIEDLRDWETRIKKIVDGEIQYTCELKYDGASISL
HYEDGKFVQAVTRGDGNQGDEVTANVRTIKSVPLQLKAYDVPDKFEIRGEIVLPWDGFHK
MNEERAEQGLDLYRNPRNTASGSLKLQDSAEVAKRPLDCLLYQLAGENLPVKSQFDSLTL
ARKWGFKAPLESKLVNSIEEVFEFINHWDVARKELPYETDGVVIKVNSLDQQDELGFTAK
APKWAMAYKFAAEQVSTRLEEITYQVGRTGSITPVANLEAVEISGTTVRRASLHNADQIE
KLDIRVGDEVYVEKGGEIIPKIVAVDLTKRPENSTPTVYATRCPECNTELVRNEGDAKHY
CPNDMACPPQVKGRIEHFISRKAMDIDGIGAETVGQLVDAGFINNYADLYDLTVEQVLPL
ERMAQKSAENMINGIEASKQVPFERVLFGLGIRYVGETIAKKLAKHYKNIDSLFNMPAEP
EKTSIDLFADVSSAADKKMEELTAVPEIGESIAQSLVEFIQNEDQMAIVERLKNAGLQFA
LSEEQLEGQTDKLSGKSFVISGVFEMSRNDLKKLVENNGGKNSSSISSKTDYLIRGDKMG
PSKLEKAEKLGITMISEQEFLAMI
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgagtccaaaagaacaaatacaatccttgcgtgatgagttgcgtgagcacaattataat
tactacgttaacgataatcctactatttcagactttgagtttgataagaaactggagcaa
ttaaaaacgctagaagctgctcatccagagttctatgactcgaccagtccatctgtacgt
gtaggtggtgaggttactaaaaatttcaataccgttaagcatatcaaccgtatgtactcg
ctggataattcttattccatcgaggatttgcgcgattgggaaacgcgtatcaaaaaaata
gtagatggcgaaattcagtatacttgtgagctcaaatatgatggtgccagtattagttta
cattatgaagacggaaagtttgttcaagcagtaactcgtggtgatggaaatcaaggtgat
gaagtaacggccaatgtgcgcaccattaaatcagtgccattgcaattaaaagcctatgat
gtgcctgacaaatttgaaatacgtggtgagattgtgctgccttgggatggatttcataaa
atgaatgaagaacgagccgaacaaggactggatttatatcgcaatccgcgtaatacggct
agtggtagtttaaagttgcaggatagtgctgaggtggcaaaaagaccattggactgtttg
ttgtaccaacttgctggtgaaaatttaccagtaaaaagtcagtttgattctttaacgctt
gcgagaaaatggggtttcaaagcacctctagaaagtaaattagtcaactccatagaagaa
gtgtttgaatttatcaatcactgggatgtagctcgcaaagagctaccatatgaaaccgat
ggtgttgtaataaaagtgaattcgcttgatcaacaagatgagttaggttttactgccaaa
gcgcctaaatgggcgatggcttataagtttgcagcagagcaagtatcgacgagactagag
gaaattacctatcaagtaggtcgtactggctctatcacaccagtggctaatctagaagct
gtagaaatatctggaactactgtaagacgtgcaagccttcacaatgcagatcagatagaa
aaactagatataagagtaggcgatgaggtatatgtagaaaaaggtggtgagatcattcct
aaaatagtggctgtagatttaactaaacgaccagaaaattccactcctacggtgtatgcc
acgcgctgcccagaatgtaatacagagttagttcgtaacgaaggagatgcaaagcattac
tgtcctaacgacatggcctgtcctccacaagtgaaaggtaggattgagcattttatttct
cgcaaagcgatggatattgatgggataggagcagagactgtaggtcagttagtcgacgca
ggtttcatcaacaactatgcagatttatacgacctaacggtggagcaggttttaccgcta
gaacgcatggcccaaaaaagtgccgagaatatgattaatggaatagaggctagtaagcaa
gtgccttttgagcgtgtgctgttcgggctagggattagatatgtaggcgaaacaatagct
aaaaaactagctaaacattataaaaatattgactcgttatttaatatgccagcagaacca
gaaaagacttctatcgatttatttgctgatgtttcgagtgccgcagataagaagatggaa
gaattaaccgctgttccagaaataggagaaagtattgctcaatctctagtggaattcatc
cagaatgaggatcaaatggcgatagtagaacgcttaaaaaatgctggtctacaatttgca
ttgagtgaagagcaattagaaggccagactgacaagttatctggtaaaagttttgtgatt
tcaggcgttttcgaaatgtctagaaatgatttaaagaagctggtagagaataacggtggt
aagaactctagttctatttctagtaagactgactatttgatccgtggtgataaaatggga
ccgtctaaacttgaaaaagcagagaaattgggtataacgatgattagcgagcaagagttt
cttgcaatgatttaa
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