Novosphingobium decolorationis: HT578_20890
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Entry
HT578_20890 CDS
T07993
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ndr
Novosphingobium decolorationis
Pathway
ndr03030
DNA replication
ndr03410
Base excision repair
ndr03420
Nucleotide excision repair
ndr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ndr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HT578_20890 (ligA)
03410 Base excision repair
HT578_20890 (ligA)
03420 Nucleotide excision repair
HT578_20890 (ligA)
03430 Mismatch repair
HT578_20890 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ndr03032
]
HT578_20890 (ligA)
03400 DNA repair and recombination proteins [BR:
ndr03400
]
HT578_20890 (ligA)
Enzymes [BR:
ndr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HT578_20890 (ligA)
DNA replication proteins [BR:
ndr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HT578_20890 (ligA)
DNA repair and recombination proteins [BR:
ndr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HT578_20890 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HT578_20890 (ligA)
MMR (mismatch excision repair)
DNA ligase
HT578_20890 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HT578_20890 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
PTCB-BRCT
Nlig-Ia
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QVM85834
LinkDB
All DBs
Position
4537305..4539452
Genome browser
AA seq
715 aa
AA seq
DB search
MSSESAPDFLAEADAANELMRLARQIKRANRKYHAEDAPEISDAEYDALVRRNAELEEAF
PHLKRPDSPSSAVGHEVAASPLGKVTHEVRMMSLDNAFSDEEVAEFLARVRRFLSLSAEE
PLAVTAEDKIDGLSCSLRYEKGKLVRAATRGDGQVGEDVTPNVAHIPDIVQELTGEGIPE
VFEVRGEVYMEKAAFLALNETLMDEARAEAERKGEPLDEAKVRQFANPRNAAAGSLRQKD
AKVTAKRPLRFWAHGWGAASAVPGDTQHEVIRRIESWGLPVSPQFRRCESLEELLEAYRA
IRDGRANLDFEIDGVVYKIDRLDLQQRLGFVAKAPRWAMAHKFPAEQAETTLEKIEIQVG
RTGKLTPVGRLQPVLVGGVTVTNVTLHNRDEIERLGVRPGDRVVIQRAGDVIPQVVENRT
REEVRDPFVFPDHCPECGSEAVAEEGEVDVRCTGGLICPAQRTERLKHFVSRGALDIDGL
GEKTIDEFFARGWLESPADIFRLRQRRDDILALDGWKDKSVDNLLAAVENRRAPDAARLL
FGLGIRHVGTVTARDLLKRFETLPALREIAEKAHVKDGEEAATEASEAYAELISIDGVGP
VVVGALGDFFHEEHNRAVWDDLLSEVTPPPFVVESVESEVAGKTVVFTGKLETMSRDEAK
AQAERLGAKAAGSVSSKTDLIVAGPGAGSKLKKAAELGIAVIDEAAWARIVAEAG
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgagttccgaatccgcacccgattttctcgccgaagccgacgccgccaatgaactgatg
cggctcgcgcgccagatcaagcgcgccaaccgcaagtaccacgccgaggacgcgcccgaa
atctcggacgcggagtacgacgcgctggtgcgccgcaacgccgaactggaagaggcgttt
ccgcacctgaagcgccccgacagcccgtcgagcgcggtcggtcacgaggtcgcggcctcg
ccgctcggcaaggtgactcacgaagtgcgcatgatgagcctcgacaacgccttctccgat
gaggaagtggccgagttcctggcgcgggtgcgccgtttcctctcgctgtcggccgaggaa
ccgctggcggttaccgccgaggacaagatcgacgggctctcctgctcgctgcgctacgag
aagggcaagctggtgcgcgccgcgacgcgcggcgacggacaggtgggggaggatgtgacg
cccaacgtcgcgcatatccccgacatcgtgcaggaactgaccggagaaggcatccccgag
gtcttcgaggtgcgcggcgaagtctacatggagaaggccgccttccttgcgctcaacgag
acgctgatggacgaggcgcgggccgaggcggagcgcaagggcgaaccgctcgacgaggcc
aaggtgcgccagttcgccaatccgcgcaacgcggccgccggctcgctgcgccagaaggac
gcgaaagtcaccgcaaagcgccccttgcgcttctgggcgcatggctggggcgcggcgagc
gcggtgcccggggacacccagcatgaggtcatccgccggatcgagtcctggggcttgccg
gtctcgccccagttccgccgctgcgaaagcctggaggagctgctcgaggcctaccgcgcg
atccgggatgggcgtgcgaacctcgatttcgagatcgacggcgtggtctacaagatcgac
cggctcgacctgcagcagcgtctgggcttcgtcgccaaggcgccgcgctgggcgatggca
cacaagttccccgccgaacaggccgagacgactctggagaagatcgagatccaggtcggg
cgtaccggcaagctgaccccggtcgggcgcctgcagccggtgctggtgggcggtgtcacg
gtcaccaatgtcacgctccacaaccgcgacgagatcgagcggctgggcgtgcgtccgggc
gaccgggtggtgatccagcgcgcgggcgacgtgatcccgcaggtggtggagaaccgcacc
cgcgaggaggtacgcgatcccttcgtgttccccgatcattgccccgagtgcggctcggag
gcggtggccgaagagggcgaggtcgacgtgcggtgcacgggcggcctgatctgcccagcc
cagcgcaccgagcgtctcaagcacttcgtcagccgcggcgcgctcgacatcgatggtctg
ggcgagaagaccatcgatgagttcttcgccagaggctggctggaaagcccggccgacatc
ttccgcctgcgccagcgccgggacgatatccttgcgctcgatggttggaaggacaagtct
gtggacaacctgttggcagcggtggaaaaccgccgggcccccgatgccgcacgcctgctc
ttcgggctgggcatccgccatgtcggcaccgtgactgctcgcgatcttctcaagcgtttc
gagacacttcctgcccttcgcgagatcgccgagaaggcccacgtcaaggacggcgaggag
gccgccaccgaggcgagcgaggcctacgccgaactcatctcgattgacggtgtggggccg
gtggtcgtgggcgcgttgggggatttcttccacgaagagcacaaccgtgcggtctgggac
gatctcctgtccgaagtgacgccgccgccgttcgtggtcgaaagcgtggaaagcgaagtg
gcgggcaagaccgtcgtctttaccggcaagctggagacgatgagccgtgatgaggccaag
gcgcaggccgaacggcttggcgccaaggcggcgggctcggtctcgtccaagaccgatctt
atcgtcgccgggccgggcgcaggctcgaagctgaagaaggcggcggaactcggaattgcg
gtgatcgacgaagcggcctgggccaggatcgtcgccgaggcgggctga
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