Neobacillus drentensis: L1999_02260
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Entry
L1999_02260 CDS
T08277
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ndt
Neobacillus drentensis
Pathway
ndt03030
DNA replication
ndt03410
Base excision repair
ndt03420
Nucleotide excision repair
ndt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ndt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L1999_02260 (ligA)
03410 Base excision repair
L1999_02260 (ligA)
03420 Nucleotide excision repair
L1999_02260 (ligA)
03430 Mismatch repair
L1999_02260 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ndt03032
]
L1999_02260 (ligA)
03400 DNA repair and recombination proteins [BR:
ndt03400
]
L1999_02260 (ligA)
Enzymes [BR:
ndt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
L1999_02260 (ligA)
DNA replication proteins [BR:
ndt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L1999_02260 (ligA)
DNA repair and recombination proteins [BR:
ndt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
L1999_02260 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L1999_02260 (ligA)
MMR (mismatch excision repair)
DNA ligase
L1999_02260 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L1999_02260 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
RNA_pol_A_CTD
BRCT_2
HHH_3
5_3_exonuc
NMDAR2_C
Motif
Other DBs
NCBI-ProteinID:
ULT57432
LinkDB
All DBs
Position
456976..458982
Genome browser
AA seq
668 aa
AA seq
DB search
MDLQTASKKIEEIRSLLTLYGYEYYVLDKPSVPDAEYDMLMQELLELEGTFPELKTPDSP
SVRVGGSVLDLFEKVEHRTPMLSLGNAFNEEDLRDFDRRVRQAVGDNVSYIGELKIDGLA
VSLRYEDGLFVQGATRGDGTIGEDITANLKTINAIPLRLRENVSIEVRGEAYMPKRSFEA
LNQQRGERGEELFANPRNAAAGSLRQLDPKIAASRKLDVFLYGIGNTAETGVVTHSEGLD
YLDHLGFKTNKERRKCATIEDVIEYVNSWVDKRPHLPYEIDGIVIKVDSLAQQAVLGTTA
KSPRWAIAYKFPAEEVVTTLLAIELSVGRTGVITPTAILEPVKVAGTTVQRASLHNEDLI
REKDIKIGDKVVVKKAGDIIPEVVNVLADQRSGEEMDFQMPTHCPECESELVRLEGEVAL
RCINPKCPAQIREGLIHFVSRDAMNIEGLGEKVISQLFAVKLIGDVADIYKLTHEQLLAL
ERMGEKSVTNLLKAIEASKANSLEKLIFGLGIRHVGAKAAKTLAQQFITMEKLAQASKEE
LISINEIGDKMADSIVSFFEQEEAIELINELVLAGVNMEYKGARPISAEESDSVFAGKTV
VLTGKMEQLSRNEAKEKIEALGGNVAGSVSKKTHLVIAGEDAGSKLTKAQELGIEVWDEE
RLLVELNK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggatcttcaaaccgcttcgaaaaaaatcgaggaaataagaagcctcttaactctatat
ggttatgaatattatgtgttagacaagccatcggtaccagatgctgaatatgacatgctc
atgcaggagctgttagagctggagggaacattcccagagttaaaaacaccggattctccg
tctgtccgtgtagggggttcggttcttgacctatttgaaaaagtggagcatcgtacaccg
atgctaagcttgggtaatgctttcaatgaagaagatttacgggactttgaccggcgggtc
cgacaagctgtgggtgacaatgtttcctatattggtgaattgaaaattgatggattggcc
gtttctttgcgctatgaagatggattatttgttcaaggtgcaacccgaggcgacggaacc
attggagaagatattacggctaacctgaaaacaataaatgcaattccgcttcgccttcgg
gaaaatgtatcaattgaggtgcgcggtgaggcttatatgccaaagcgctcgtttgaagca
ttgaaccagcagcggggagaacgcggtgaggagctatttgccaaccccagaaatgcggca
gctggttcattacggcagctcgatccaaaaatcgcagcatcacggaagctggatgtattt
ttatatgggattggcaacaccgctgaaacaggggtggtgacccatagtgagggactggat
tatctagaccatcttggctttaaaaccaataaagagcgaagaaaatgtgcaacgattgag
gacgttattgagtatgttaacagctgggttgataaacggccgcatcttccatatgaaatt
gatggaattgtcatcaaagtagattcacttgcgcagcaggcagtgctcgggacaacggca
aagagcccgcgctgggcaattgcgtacaaatttccagctgaagaagtggtgacgaccctt
ttagcgattgaattaagtgtggggagaacgggtgtgattacaccgactgccattctcgag
ccagttaaagtagcagggacaactgtacaacgggcttccttacacaatgaggatttaatt
cgggaaaaagatattaaaatcggtgataaagtggttgttaaaaaggcaggtgatatcatt
ccggaagtggtaaatgtattggctgaccaacgatcaggtgaagaaatggattttcaaatg
ccaacgcattgtccggagtgtgaaagtgaacttgttcgtttagaaggggaagtagccctt
agatgtatcaatccgaaatgtccggcacaaattcgagaaggactgattcattttgtttcc
cgtgatgccatgaacattgaggggcttggggaaaaggtgatcagtcagctttttgctgtg
aaattaattggtgacgttgctgatatttataaactaacgcatgagcagctgttagccttg
gaaagaatgggtgaaaagtctgtcacgaacctgttaaaagcgattgaggcttcaaaagcc
aattcccttgaaaagctgatatttggattagggatccgccatgttggagcaaaggccgcc
aaaacattggcacaacaatttatcacaatggaaaaattagcccaggcttccaaagaggaa
ttaataagtattaatgaaatcggagataagatggctgattcgattgtctcgttttttgaa
caggaagaagcgatcgagctgataaatgagttagtattggcaggcgttaacatggaatat
aaaggggcaaggcccatttctgccgaagaatcagacagtgtatttgccggtaaaacggtg
gtccttacaggaaaaatggagcaattatcccgaaatgaagcgaaagaaaaaattgaggcc
ctcggcggcaatgtggccggaagtgttagtaaaaaaacacatcttgtcattgccggtgaa
gatgcgggttctaagctaacgaaagcccaagagctgggtatcgaagtgtgggacgaggag
aggcttttagtagaattaaataaataa
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