Neisseria dumasiana: LVJ88_04585
Help
Entry
LVJ88_04585 CDS
T08094
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ndu
Neisseria dumasiana
Pathway
ndu03030
DNA replication
ndu03410
Base excision repair
ndu03420
Nucleotide excision repair
ndu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ndu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LVJ88_04585 (ligA)
03410 Base excision repair
LVJ88_04585 (ligA)
03420 Nucleotide excision repair
LVJ88_04585 (ligA)
03430 Mismatch repair
LVJ88_04585 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ndu03032
]
LVJ88_04585 (ligA)
03400 DNA repair and recombination proteins [BR:
ndu03400
]
LVJ88_04585 (ligA)
Enzymes [BR:
ndu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LVJ88_04585 (ligA)
DNA replication proteins [BR:
ndu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LVJ88_04585 (ligA)
DNA repair and recombination proteins [BR:
ndu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LVJ88_04585 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LVJ88_04585 (ligA)
MMR (mismatch excision repair)
DNA ligase
LVJ88_04585 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LVJ88_04585 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
UOO85263
LinkDB
All DBs
Position
complement(1008831..1011284)
Genome browser
AA seq
817 aa
AA seq
DB search
MNNTTRRIQELTEQLNRYAYEYYTLDAPTVPDAEYDRLFRELEALEAAHPDLRLPESPTQ
RVGGMPLDGFESVRHTVPMLSLNNAFSPQDENGAFYHAEMLAFDERVRGGLSGVQPEYVI
EPKFDGLAISLLYRNGVLVQAATRGDGTTGEDVTQNIKTIANIPLKLRGDNLPSLLEVRG
EVLMLKADFAALNEKQAADNQKLFANPRNAAAGSLRQLDSRITAKRRLHFFAYGIARIEG
GTRLEEHIQELAYLFELGFSLPHGQFGVFPNIAEILAFYEHMSRKRPELPYEIDGMVVKV
NSLAQQETLGFVSRAPRWAIAHKFPAEEALTVVEAIDVQVGRTGAVTPVARLQPVFVGGV
TVTNATLHNEGETQRKDVRIGDTVVVRRAGDVIPEVVRVVLERRPMQTVTETVSDGLQND
LFAEPVRPSENVQTEQIPLYPQYRLPERCPICASEIEREEGEAVARCSGGMLCQAQRAQG
LIHFASRKAMDIDGLGQRQIEQLVAQNLVQHFADLYRLDVPTLQLMKENADKEQAADAGE
TVSDGLKTTAKKQSPTKWAENILAGIEASKQPELARFLFALGIRHVGERTAKSLAQAFGT
LENVRRAPEPVLTCLPDIGAVVARSIAHFFAQPEQQAMIDELLVVGVVPQNQTVTLPLSQ
YVTPAKWLSRLPGFKISETKAAALWDLAGKNTDGLLNDNALNADWQQWRNQPENAALLLS
MRQFLEQMPSENEASVSDGLNQAVAGKTFVLTGTLPTLKRDKAQAMIEAAGGKVSGSVSK
KTDYVVAGEAAGSKLEKANALGVAVLDEAQLMALLNP
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacaccacacgccgcattcaagaactcaccgaacagctcaaccgctacgcctac
gaatactacacactcgacgcacccaccgtgcccgatgccgagtacgacaggcttttccgc
gaactcgaagccctcgaagccgcacaccccgatttacgcttgcccgaaagtcccacccag
cgcgtcggcggcatgcctttggacggctttgaaagcgtgcgccataccgtgccgatgctg
tcgctgaacaatgctttttcgccgcaagacgaaaacggcgcattctatcacgccgaaatg
ctggcgtttgacgagcgcgtgcgcggcggattgtccggcgttcaacccgaatacgttatc
gaacccaaattcgacggcctcgccatcagcctgctctaccgcaacggcgtgctggttcag
gcggccacgcgcggcgacggcaccaccggcgaagacgttacccaaaatatcaaaaccatt
gccaatatcccgctgaaactgcgcggcgacaacctgccctcgctgcttgaagtgcgcggc
gaagtgctgatgctcaaagcggattttgccgccttaaacgagaaacaggctgccgacaat
caaaaactgtttgccaacccgcgcaatgctgctgcgggcagcctgcgtcaactcgattcg
cgcatcaccgccaaacgccgtctgcattttttcgcttacggcatcgcccgcatcgaaggc
ggtacacgtttggaagagcatattcaagagctggcttatttgtttgaactcggtttcagc
ctgccgcacgggcaattcggcgttttccctaatatcgccgaaatactggcattttacgaa
cacatgtcgcgaaaacgccccgaactgccgtatgaaatcgacggtatggtggtaaaagtg
aacagtttggcgcagcaggaaactctgggcttcgtttcccgtgcgccgcgctgggccatc
gcgcacaaattccccgccgaagaagccttaaccgtggtcgaagcgattgacgtacaggtc
ggccgcaccggagccgttacccccgtcgcccgcttgcaaccggtgtttgtcggcggtgtt
accgtaaccaatgccacgctgcacaacgaaggcgaaacgcaacgcaaagacgtgcgcatc
ggcgataccgtagtagtgcgccgcgcgggagacgtgattcccgaagtggtgcgcgtagtg
cttgaacgccgcccgatgcaaaccgttaccgaaaccgtttcagacggcctgcaaaacgat
ttgtttgccgaaccggttaggccgtctgaaaacgtacaaaccgaacaaataccgctttac
ccccaataccgcctgcccgaacgctgcccgatctgcgccagtgaaatcgaacgcgaagaa
ggcgaagccgtggcccgttgcagcggcggcatgttgtgccaagcccaacgcgcgcaaggg
ctgattcattttgcttcgcgcaaagcgatggatatcgacggcttaggccagcggcaaatc
gagcagctggtcgcccaaaatctggtgcagcatttcgccgacctttaccgtttggacgta
ccgaccttgcagctgatgaaagaaaacgccgataaggaacaggctgccgatgccggcgaa
acggtttcagacggcctcaaaacaacggctaaaaaacagtcgccgaccaagtgggctgaa
aacatcctcgccggtatcgaagccagcaagcagcccgaactcgcccgttttctgttcgcc
ctcggcatccgccacgtcggcgagcgcacggccaaatcgctggctcaagcgttcggcacg
ctggaaaacgtgcgccgcgcccccgaacccgtgctgacctgcctgcccgacatcggtgcc
gtcgtcgcccgttccatcgcccatttcttcgcccaaccggagcagcaggccatgatagac
gaactgcttgtcgtcggcgttgttccgcaaaaccaaacagttaccctgcccctttcccaa
tatgttactccggccaaatggctcagccgcctgcccggtttcaaaatcagcgaaaccaaa
gccgccgccttgtgggatttggccggcaaaaatacagacggcctgttgaacgacaatgcg
ttgaatgccgactggcaacaatggcgcaaccaacccgaaaatgcagcccttttactatct
atgcggcagtttttggaacagatgccgtctgaaaacgaagcatccgtttcagacggcctc
aaccaagccgtagccggaaaaaccttcgtgcttaccggcactttgccgacgctgaaacgc
gacaaagcacaagccatgattgaagccgcgggcgggaaagtgtcaggcagcgtatcgaaa
aaaaccgattatgtagtcgcgggcgaagcggcgggcagcaaactggaaaaagccaatgcg
ctgggcgtggcggtattggatgaagcacaattgatggcacttttaaacccgtaa
DBGET
integrated database retrieval system
